genome.fa.s24.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397277.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2651878

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15576--15697	60	2.0	60	81	6	140	24	28	19	27	1.99
16761--16795	18	1.9	18	100	0	70	28	17	11	42	1.83
23308--23615	132	2.3	132	81	1	384	32	15	12	35	1.86
65258--65310	24	2.2	24	86	6	72	24	30	22	22	1.99
66415--66484	24	2.9	24	82	0	86	27	20	31	21	1.98
77527--77680	23	6.7	22	72	5	94	37	18	11	33	1.86
77527--77672	67	2.1	69	81	5	161	38	19	10	32	1.85
79028--79079	20	2.5	21	73	17	63	28	11	30	28	1.92
80312--80356	23	2.0	23	86	0	63	2	4	8	84	0.84
80305--80356	11	4.5	11	80	7	59	3	3	7	84	0.85
91447--91490	15	2.9	15	86	6	54	77	0	2	20	0.88
91450--91499	12	3.9	13	82	10	50	72	0	4	24	1.02
93915--93956	19	2.2	19	87	8	59	28	2	0	69	1.01
93915--93969	7	8.0	7	80	8	60	25	3	0	70	1.03
93924--93975	22	2.3	22	86	3	68	23	1	0	75	0.91
93929--93975	15	3.2	15	77	14	53	21	2	0	76	0.89
93939--93983	22	2.0	22	82	0	54	17	6	2	73	1.15
94569--94593	3	8.3	3	100	0	50	32	0	0	68	0.90
97286--97721	60	7.2	60	77	6	403	37	17	12	33	1.87
97290--97726	123	3.6	123	79	5	379	37	17	12	33	1.87
110878--110922	24	2.0	22	86	8	63	28	6	8	55	1.56
117151--117228	39	2.0	39	94	0	138	34	14	19	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127562--127610	23	2.1	23	96	0	89	26	16	12	44	1.82
138523--138665	49	3.0	48	82	2	169	30	20	13	34	1.92
138619--138712	40	2.3	40	83	3	127	27	23	13	35	1.93
140312--140346	18	1.9	18	88	0	52	25	14	28	31	1.95
140904--140930	13	2.1	13	100	0	54	18	29	0	51	1.46
143877--144135	134	1.9	134	81	1	313	30	7	30	31	1.85
159909--159945	17	2.2	17	95	0	65	56	2	0	40	1.13
178928--178977	24	2.3	22	83	13	59	38	14	12	36	1.83
179167--179200	3	11.3	3	100	0	68	67	0	0	32	0.91
182073--182474	204	2.0	204	91	1	653	38	15	13	32	1.87
213952--214066	56	2.1	56	91	3	187	45	14	14	25	1.83
244047--244103	18	3.3	16	75	17	60	56	5	3	35	1.39
244256--244284	14	2.0	15	93	6	51	68	6	0	24	1.13
245757--245801	19	2.3	19	88	3	63	73	13	8	4	1.23
248244--248318	33	2.2	34	85	2	107	37	12	38	12	1.79
248629--248673	15	2.9	15	87	9	56	44	2	2	51	1.26
249511--249598	6	13.7	6	79	11	86	26	0	0	73	0.83
249493--249560	33	2.1	33	94	0	118	25	1	1	72	1.02
249511--249573	13	4.8	13	83	12	76	25	0	0	74	0.82
249506--249591	33	2.6	33	87	7	113	27	0	0	72	0.85
249514--249574	27	2.3	26	89	8	97	26	0	0	73	0.83
249509--249598	39	2.3	38	85	9	119	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249516--249599	13	6.4	13	68	13	55	26	0	0	73	0.83
253093--253296	101	2.0	101	90	1	320	28	18	12	40	1.87
260535--260653	39	3.1	39	84	7	161	31	10	23	33	1.89
262163--262227	7	9.3	7	89	0	103	41	40	1	16	1.58
262721--262749	8	3.6	8	100	0	58	62	0	37	0	0.96
265407--265453	19	2.6	18	83	6	58	40	6	21	31	1.78
271520--271563	21	2.0	21	83	12	54	36	20	9	34	1.84
272210--272286	4	19.2	4	86	0	55	35	0	14	50	1.43
272206--272280	16	4.9	16	84	9	86	33	0	16	50	1.45
272210--272286	12	6.2	12	83	5	82	35	0	14	50	1.43
272214--272287	26	2.8	26	87	4	103	33	0	16	50	1.45
275696--275724	7	4.1	7	100	0	58	41	27	0	31	1.56
286689--286732	21	2.0	22	91	4	72	61	6	0	31	1.22
287902--287942	21	2.0	21	85	9	57	21	0	2	75	0.92
288735--288769	5	7.0	5	93	0	61	80	2	0	17	0.84
290251--290390	45	3.1	44	60	20	99	40	12	6	40	1.69
290272--290415	45	3.2	45	61	20	109	45	9	5	39	1.61
290164--290450	91	3.2	91	95	1	504	41	12	6	38	1.71
290945--290984	19	2.1	19	85	0	53	42	5	0	52	1.23
291911--292026	53	2.2	53	80	7	128	34	13	13	37	1.85
293044--293086	16	2.7	16	82	10	52	60	9	2	27	1.40
293044--293096	15	3.7	15	72	20	51	62	9	1	26	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300079--300107	7	4.1	7	100	0	58	41	0	31	27	1.56
303902--303933	17	1.9	17	93	6	57	50	3	3	43	1.33
304231--304926	360	1.9	357	86	5	995	40	7	7	43	1.61
307054--307102	22	2.3	22	86	10	66	59	0	6	34	1.22
309508--309634	35	3.7	35	82	9	136	42	14	8	33	1.77
311882--311921	17	2.4	16	87	8	53	12	15	2	70	1.28
312067--312117	26	2.0	26	84	7	68	68	7	0	23	1.15
318560--318590	14	2.2	14	94	0	53	54	22	0	22	1.44
323601--323666	26	2.5	26	87	0	96	56	3	1	39	1.24
323650--323704	20	2.6	21	81	13	60	45	5	1	47	1.36
323662--323712	27	1.9	26	84	4	66	47	5	1	45	1.38
342507--342585	5	16.2	5	71	10	56	69	1	2	26	1.09
342505--342536	15	2.1	15	100	0	64	65	0	0	34	0.93
342625--342698	33	2.2	34	90	2	114	67	1	4	27	1.16
342915--342954	15	2.7	15	92	0	62	35	27	5	32	1.79
360041--360077	18	2.0	19	89	5	58	48	0	5	45	1.25
362468--362520	25	2.1	25	82	6	63	22	15	33	28	1.94
364084--364126	14	3.2	13	87	12	61	18	6	0	74	1.04
371081--371125	12	3.9	12	94	5	76	40	17	42	0	1.50
385241--385279	17	2.4	17	86	4	53	2	7	2	87	0.73
385252--385277	10	2.6	10	100	0	52	0	7	0	92	0.39
399564--399623	21	2.9	21	76	11	54	43	15	13	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
401035--401085	27	1.9	27	92	4	86	52	11	11	23	1.70
404420--404449	2	15.0	2	100	0	60	50	0	0	50	1.00
406650--406817	55	3.0	55	87	6	198	46	13	16	23	1.82
413199--413268	29	2.3	30	82	4	79	45	14	11	28	1.79
414633--414685	23	2.3	23	100	0	106	26	11	28	33	1.91
422072--422202	26	5.0	26	75	5	93	34	17	9	38	1.82
423023--423092	28	2.5	28	75	13	72	51	2	1	44	1.25
423399--423593	28	7.1	28	72	9	125	37	17	10	33	1.85
423399--423593	55	3.6	54	78	2	192	37	17	10	33	1.85
423645--423715	29	2.4	29	85	4	88	28	18	21	32	1.96
423919--423958	21	1.9	21	85	10	55	22	2	22	52	1.59
434202--434344	66	2.2	66	84	5	182	37	23	4	34	1.76
435111--435182	36	2.0	36	100	0	144	36	11	8	44	1.70
435578--435608	15	2.0	16	93	6	55	45	9	6	38	1.63
439406--439437	16	2.0	16	100	0	64	31	6	25	37	1.81
443352--443388	18	2.1	19	85	10	51	29	0	8	62	1.24
443674--443698	13	1.9	13	100	0	50	16	8	16	60	1.58
449605--449650	22	2.2	21	85	11	60	41	2	2	54	1.25
450284--450348	33	1.9	34	93	3	114	12	36	15	35	1.85
450988--451029	15	2.8	15	92	0	66	33	26	11	28	1.92
453068--453103	18	2.0	18	94	0	63	38	19	8	33	1.82
455947--455987	21	2.0	21	85	4	57	26	4	29	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457549--457593	22	2.0	22	86	0	63	40	13	4	42	1.64
471546--471583	20	1.9	20	100	0	76	36	21	10	31	1.87
479031--479108	32	2.4	32	95	0	138	30	16	14	38	1.88
480868--481041	29	6.2	28	80	9	187	39	10	13	36	1.78
480868--481033	86	2.0	84	86	2	233	39	10	12	37	1.79
480868--481041	57	3.1	56	75	14	171	39	10	13	36	1.78
481060--481123	28	2.2	28	83	2	74	35	14	12	37	1.83
484395--484637	35	6.9	35	69	9	134	32	14	27	24	1.95
489921--490000	34	2.3	35	83	12	103	3	40	8	47	1.52
507263--507301	20	1.9	21	89	5	62	58	7	0	33	1.26

Tables:   1   2   3   4   5   6