genome.fa.s24.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397277.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2651878

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651850--1651986	49	2.8	49	76	2	141	35	24	13	26	1.92
1654391--1654422	2	16.0	2	100	0	64	50	0	0	50	1.00
1654996--1655024	12	2.3	13	94	5	51	48	0	3	48	1.18
1657075--1657122	21	2.3	21	92	3	80	58	14	14	12	1.64
1664751--1664775	2	12.5	2	100	0	50	48	0	0	52	1.00
1675950--1675985	18	2.0	18	88	0	54	8	27	0	63	1.23
1677555--1677589	2	17.5	2	100	0	70	51	0	0	48	1.00
1678205--1678250	23	2.0	23	86	0	65	30	2	21	45	1.64
1678538--1678751	27	7.8	28	76	7	188	33	7	16	42	1.77
1678537--1678751	55	3.9	54	82	4	225	33	7	16	42	1.76
1678552--1678738	82	2.3	83	78	1	205	33	8	16	41	1.79
1684374--1684413	21	1.9	21	94	0	71	45	5	15	35	1.68
1687665--1687697	2	16.5	2	93	0	57	51	0	0	48	1.00
1690933--1690967	2	17.0	2	88	5	52	45	0	5	48	1.26
1695954--1696009	22	2.5	22	88	0	76	32	12	26	28	1.93
1703185--1703246	27	2.3	27	100	0	124	27	6	27	38	1.81
1707458--1707486	4	7.5	4	92	7	51	0	20	0	79	0.74
1713957--1713994	18	2.1	18	85	9	51	55	0	23	21	1.44
1714277--1714420	58	2.5	58	96	0	261	47	5	23	22	1.72
1714277--1714429	29	5.3	29	72	0	117	47	5	24	22	1.71
1714590--1714644	18	3.1	18	97	0	101	34	7	16	41	1.76
1723370--1723704	166	2.0	167	95	1	600	33	20	14	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1735034--1735059	2	13.0	2	100	0	52	50	0	0	50	1.00
1740068--1740116	20	2.5	20	93	0	80	14	32	2	51	1.54
1742609--1742659	25	2.1	23	82	13	59	45	19	1	33	1.62
1743521--1743550	2	15.0	2	100	0	60	50	0	0	50	1.00
1748614--1748645	2	16.0	2	100	0	64	50	50	0	0	1.00
1752169--1752462	28	10.2	29	78	7	260	40	6	12	40	1.69
1752169--1752462	57	5.1	57	79	7	258	40	6	12	40	1.69
1752253--1752467	87	2.5	85	83	6	254	41	5	11	41	1.64
1758758--1758942	70	2.6	70	78	5	176	34	18	19	28	1.95
1759049--1759092	21	2.1	21	100	0	88	36	25	4	34	1.76
1760409--1760493	29	2.9	30	75	10	93	23	23	28	24	2.00
1761852--1762069	29	7.6	29	80	6	230	38	9	12	38	1.77
1761852--1762069	57	3.8	57	83	3	276	38	9	12	38	1.77
1768778--1768804	2	13.5	2	100	0	54	48	0	0	51	1.00
1785596--1785638	19	2.2	19	83	4	50	6	2	13	76	1.08
1789534--1790020	240	2.0	243	86	5	675	52	12	9	26	1.68
1789818--1790253	144	3.0	142	86	5	565	56	11	9	21	1.64
1798400--1798507	53	2.1	52	87	1	153	39	6	12	40	1.69
1801775--1801823	25	1.9	26	87	4	73	16	8	22	53	1.69
1806987--1807048	26	2.4	26	97	0	115	45	16	11	27	1.81
1807349--1807392	21	2.0	22	91	4	72	31	0	6	61	1.22
1809988--1810217	68	3.4	67	75	6	185	30	25	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1820737--1820777	22	1.9	22	90	5	66	24	24	17	34	1.96
1825865--1825974	53	2.1	51	83	6	132	22	8	19	50	1.74
1825893--1826015	51	2.4	52	83	8	153	21	6	21	50	1.71
1829202--1829404	42	4.8	42	80	7	137	22	16	23	37	1.94
1829244--1829416	42	4.1	42	83	5	215	22	16	21	39	1.92
1829650--1829774	34	3.6	34	79	5	126	33	12	19	35	1.88
1834266--1834298	16	2.1	16	88	5	50	24	15	24	36	1.93
1834300--1834362	32	2.0	32	90	6	101	38	4	20	36	1.74
1843564--1843595	7	4.6	7	92	0	55	28	25	18	28	1.98
1843810--1843859	23	2.3	22	86	6	66	60	2	0	38	1.09
1850263--1850315	27	2.0	27	81	7	63	20	3	13	62	1.46
1856974--1857046	33	2.2	33	90	0	110	60	0	9	30	1.29
1860019--1860069	21	2.4	21	90	3	75	19	25	5	49	1.71
1864184--1864227	21	2.0	22	91	4	72	61	6	0	31	1.22
1868226--1868267	21	2.0	20	86	4	57	40	11	9	38	1.75
1876565--1877021	215	2.1	215	85	4	605	42	7	5	45	1.53
1877769--1877800	15	2.1	15	100	0	64	21	21	31	25	1.98
1878299--1878353	29	1.9	28	85	3	74	29	1	5	63	1.27
1896455--1896510	11	4.2	14	80	15	57	55	0	0	44	0.99
1896453--1896540	15	5.6	17	73	19	68	59	0	0	40	0.98
1896444--1896545	21	4.7	21	67	16	64	61	0	0	38	0.96
1899167--1899206	10	4.0	10	83	9	55	45	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1900843--1900911	30	2.3	30	89	0	111	40	2	2	53	1.31
1905956--1905985	14	2.1	15	93	6	53	23	0	10	66	1.21
1917579--1917618	21	2.0	19	90	9	62	52	0	0	47	1.00
1917575--1917624	10	4.8	10	79	16	57	54	0	0	46	1.00
1917946--1918014	30	2.3	29	80	11	86	47	2	10	39	1.52
1918256--1918293	18	2.1	19	90	5	60	50	0	0	50	1.00
1920595--1920638	18	2.4	18	85	14	56	34	6	31	27	1.83
1920721--1920776	25	2.2	25	84	6	69	39	14	17	28	1.89
1920728--1920777	25	2.0	25	88	7	75	40	10	18	32	1.83
1932685--1932775	36	2.6	34	79	6	103	38	19	17	24	1.93
1933715--1933865	28	4.9	31	75	15	134	33	15	7	43	1.74
1933715--1933865	61	2.5	61	87	0	203	33	15	7	43	1.74
1938452--1938491	18	2.2	18	86	0	53	50	2	2	45	1.28
1941572--1941791	110	2.0	110	91	1	361	52	13	7	26	1.67
1942736--1942792	28	2.0	28	93	6	98	29	14	15	40	1.87
1947852--1947892	5	7.8	5	84	10	55	19	21	2	56	1.54
1950089--1950113	2	12.5	2	100	0	50	52	0	0	48	1.00
1953190--1953221	14	2.3	14	94	0	55	18	25	9	46	1.79
1954061--1954117	22	2.4	24	80	11	64	38	5	0	56	1.22
1954079--1954124	22	2.1	22	84	4	58	41	6	0	52	1.27
1955146--1955217	37	1.9	37	83	10	94	47	2	4	45	1.36
1958225--1958268	17	2.6	17	79	13	54	29	2	0	68	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958409--1958451	20	2.2	20	95	0	77	55	0	2	41	1.12
1959092--1959153	26	2.4	26	100	0	124	27	11	14	46	1.78
1960461--1960590	44	3.0	43	82	2	172	33	25	15	26	1.95
1963325--1963543	64	3.5	63	75	10	225	39	1	2	56	1.20
1963265--1963543	130	2.2	128	89	6	435	41	2	2	54	1.26
1963514--1963570	27	2.2	25	82	14	71	42	3	5	49	1.42
1963530--1963846	130	2.5	122	82	8	312	41	1	2	54	1.23
1963388--1963716	155	2.1	152	90	6	513	41	1	2	54	1.23
1963667--1963855	27	7.1	27	71	18	112	39	0	3	56	1.19
1963698--1963749	16	3.3	16	82	15	63	48	1	0	50	1.12
1963667--1963749	31	2.9	29	83	8	98	43	1	1	54	1.16
1963583--1963846	123	2.1	126	88	6	383	40	0	2	56	1.17
1963388--1963761	151	2.5	148	86	8	436	42	1	2	54	1.22
1963739--1963803	20	3.8	17	75	16	64	30	0	1	67	1.00
1963781--1963809	13	2.1	14	93	6	51	31	0	0	68	0.89
1963926--1964001	23	3.2	23	83	9	73	46	0	1	52	1.08
1969098--1969208	46	2.6	40	76	15	123	28	36	7	27	1.84
1969113--1969260	46	3.1	46	85	5	188	29	37	6	27	1.82
1969113--1969260	52	3.0	49	83	9	194	29	37	6	27	1.82
1979506--1979603	15	6.9	14	76	19	53	77	5	5	12	1.09
1979506--1979603	14	6.8	14	74	15	67	77	5	5	12	1.09
1979522--1979622	6	15.8	6	70	16	62	78	2	2	15	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1979527--1979604	27	2.9	26	80	12	77	79	3	3	12	1.00
1979521--1979603	7	11.7	7	72	20	66	79	3	3	13	1.00
1979521--1979603	14	5.9	13	78	13	76	79	3	3	13	1.00
1980354--1980413	24	2.9	19	69	21	57	50	6	5	38	1.51
1981806--1981904	22	4.7	20	75	20	85	76	2	4	17	1.03
1981806--1981889	31	2.5	33	77	12	84	77	2	4	15	1.04
1981788--1981905	14	8.0	14	69	19	64	76	3	4	16	1.08
1982893--1982950	23	2.5	23	81	13	57	68	5	6	18	1.31
1984630--1984682	21	2.5	22	87	3	81	20	5	33	39	1.76
1984758--1984871	23	5.0	23	67	7	81	24	7	23	44	1.78

Tables:   1   2   3   4   5   6