genome.fa.s24.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397277.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2651878

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044859--1045057	60	3.4	56	77	8	175	38	11	10	39	1.76
1045032--1045072	21	2.0	21	95	0	73	53	14	9	21	1.70
1051734--1051759	2	13.0	2	100	0	52	0	0	50	50	1.00
1057468--1057604	68	2.0	68	92	0	229	35	17	15	32	1.91
1075604--1075649	20	2.2	21	84	7	58	58	2	4	34	1.30
1077975--1078021	19	2.4	20	75	13	53	46	6	21	25	1.74
1080976--1081196	35	6.3	35	73	4	142	44	13	5	36	1.66
1080995--1081166	35	4.9	35	75	5	157	45	12	4	37	1.62
1080976--1081196	107	2.1	103	83	3	280	44	13	5	36	1.66
1080963--1081181	71	3.1	69	78	5	208	43	12	5	37	1.67
1094588--1094629	16	2.6	16	96	0	75	28	28	7	35	1.84
1096779--1096813	3	11.7	3	87	0	52	0	34	5	60	1.21
1101565--1102341	261	3.0	261	97	1	1467	32	17	20	29	1.95
1104010--1104170	75	2.1	76	87	5	229	40	6	11	40	1.68
1104034--1104190	75	2.1	76	82	5	185	43	6	12	36	1.68
1105111--1105154	2	21.5	2	95	4	79	47	0	2	50	1.13
1109313--1109375	18	3.4	18	73	18	67	28	4	4	61	1.36
1109301--1109378	36	2.2	35	93	6	140	26	8	5	58	1.49
1119847--1119899	15	3.5	15	78	2	52	33	16	0	49	1.47
1120134--1120297	77	2.1	78	86	3	233	40	11	6	41	1.66
1123100--1123375	145	1.9	145	85	5	380	38	15	12	34	1.85
1139318--1139357	21	1.9	21	90	10	64	32	5	27	35	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1165177--1165360	27	6.5	28	80	8	196	33	13	10	42	1.78
1166454--1169825	171	19.9	169	71	9	1240	39	12	12	35	1.81
1166454--1169759	341	9.8	336	75	8	1606	39	12	12	35	1.81
1167806--1169824	171	11.8	169	76	6	1504	39	12	12	35	1.81
1167806--1169824	341	5.9	340	78	4	1685	39	12	12	35	1.81
1173903--1174651	171	4.4	171	78	5	730	40	11	12	34	1.80
1174801--1178276	171	20.5	170	74	8	1744	35	12	12	39	1.81
1174802--1178337	341	10.4	337	76	7	2389	35	12	12	39	1.81
1174801--1178237	512	6.8	509	76	8	2432	35	12	12	39	1.81
1177458--1177758	160	1.9	159	82	4	374	36	13	10	39	1.79
1177686--1178337	326	2.0	327	80	3	733	36	11	11	40	1.78
1180154--1182875	343	8.0	340	78	6	2090	39	12	12	34	1.82
1180154--1183374	514	6.3	511	77	6	2437	39	12	12	34	1.82
1180154--1182880	171	15.9	172	77	6	2029	39	12	12	34	1.82
1183217--1183546	170	2.0	161	77	8	324	41	12	12	30	1.80
1187631--1187690	25	2.4	25	80	5	77	48	8	18	25	1.75
1200085--1200148	32	2.0	32	84	0	83	40	17	21	20	1.91
1202760--1202858	52	1.9	51	83	2	126	37	11	13	38	1.80
1206477--1206550	24	3.2	24	66	14	73	40	28	5	25	1.77
1206459--1206550	46	2.0	46	97	0	175	35	30	5	28	1.80
1206469--1206541	22	3.2	22	65	14	58	38	28	4	28	1.75
1212062--1212118	7	7.7	7	78	9	60	0	35	0	64	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212052--1212125	22	3.4	21	81	9	94	0	37	0	62	0.96
1212050--1212130	15	5.5	15	85	2	110	0	38	0	61	0.96
1212161--1212188	10	2.8	10	100	0	56	0	21	0	78	0.75
1213661--1213708	24	2.0	24	95	0	87	18	27	8	45	1.78
1223542--1223735	68	2.9	68	82	4	239	34	11	20	33	1.88
1229986--1230048	27	2.3	27	81	13	76	39	14	14	31	1.86
1229986--1230097	28	4.1	28	75	13	83	36	16	14	32	1.89
1233137--1233167	2	15.5	2	100	0	62	48	0	0	51	1.00
1240734--1241312	189	3.1	189	81	3	648	30	17	14	36	1.90
1241170--1241226	26	2.1	27	80	6	62	28	21	15	35	1.94
1241767--1241823	29	2.0	28	93	3	96	36	26	7	29	1.83
1241883--1241942	29	2.0	30	87	3	86	36	20	13	30	1.90
1243304--1243329	2	13.0	2	100	0	52	50	50	0	0	1.00
1250217--1250258	18	2.3	18	87	0	57	40	7	26	26	1.81
1251689--1251728	19	2.2	19	86	4	55	50	0	2	47	1.14
1254855--1254994	73	1.9	73	82	0	172	34	17	22	26	1.95
1255232--1255258	14	1.9	14	100	0	54	33	7	7	51	1.58
1266854--1266897	9	4.7	9	81	18	54	9	6	0	84	0.79
1266854--1266898	19	2.3	20	82	17	60	8	8	0	82	0.85
1284946--1285011	27	2.3	29	82	5	73	46	10	9	33	1.70
1290578--1290608	16	1.9	16	93	0	53	35	6	0	58	1.24
1291247--1291284	18	2.1	19	90	5	60	50	7	7	34	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1306841--1306938	31	3.2	30	68	21	85	19	3	28	48	1.63
1306834--1307007	62	2.8	61	82	5	197	21	4	29	44	1.72
1308284--1308329	14	3.4	13	82	8	56	69	0	30	0	0.89
1308293--1308358	21	3.1	21	80	6	71	59	0	40	0	0.98
1308326--1308368	21	1.9	21	81	13	50	55	0	44	0	0.99
1313645--1313689	15	2.9	16	81	12	58	28	0	13	57	1.36
1317675--1317810	44	3.1	43	83	5	159	36	26	14	22	1.93
1318980--1319010	16	1.9	16	93	0	53	67	9	9	12	1.41
1328208--1328316	44	2.5	43	89	1	155	36	28	11	22	1.90
1333882--1333913	16	1.9	16	93	6	55	28	0	12	59	1.34
1355150--1355203	24	2.3	24	93	3	92	37	7	16	38	1.77
1356417--1356482	29	2.3	29	94	0	114	39	21	1	37	1.63
1369321--1369435	40	2.9	40	85	5	160	23	18	19	39	1.92
1378822--1378847	2	13.0	2	100	0	52	50	0	0	50	1.00
1389227--1389321	29	3.4	29	70	20	85	29	12	24	33	1.92
1401150--1401188	17	2.3	17	90	0	60	17	33	15	33	1.92
1401285--1401338	24	2.2	24	90	6	83	51	20	5	22	1.67
1414139--1414176	20	1.9	20	94	0	67	44	10	10	34	1.73
1422650--1422684	16	2.2	17	90	10	56	22	2	11	62	1.41
1424174--1424278	40	2.6	41	83	8	128	30	4	29	35	1.78
1429834--1429889	19	2.8	21	74	23	57	19	0	7	73	1.06
1434241--1434279	21	1.9	21	89	5	62	41	20	20	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1439542--1439611	30	2.3	30	97	0	131	38	8	25	27	1.85
1445446--1445480	18	1.9	18	88	0	52	11	17	2	68	1.31
1453802--1453847	21	2.1	22	84	11	60	34	8	6	50	1.59
1470812--1470866	28	2.0	27	82	3	65	58	0	0	41	0.98
1479326--1479369	23	1.9	23	100	0	88	15	25	13	45	1.83
1480109--1480152	20	2.2	20	95	0	79	40	25	15	18	1.90
1494476--1494532	30	1.9	30	92	0	96	40	1	24	33	1.66
1510290--1510346	28	2.0	28	93	0	96	40	0	31	28	1.57
1514064--1514095	15	2.1	16	94	5	57	43	0	3	53	1.16
1514316--1514371	26	2.2	26	83	6	69	28	0	3	67	1.07
1514326--1514370	17	2.6	17	86	6	56	28	0	0	71	0.87
1526408--1526672	134	2.0	134	90	0	422	35	23	10	30	1.89
1526782--1526832	24	2.1	25	88	3	77	39	7	19	33	1.81
1529147--1529271	40	3.2	40	78	8	114	34	20	10	35	1.86
1537399--1537455	24	2.4	25	82	5	64	59	1	36	1	1.18
1546679--1546720	18	2.3	18	88	8	59	40	23	16	19	1.91
1551416--1551451	19	1.9	19	88	5	56	36	5	11	47	1.63
1560934--1561108	76	2.3	75	83	4	217	41	13	9	36	1.77
1563153--1563433	144	2.0	141	90	2	445	30	21	12	35	1.91
1563982--1564118	67	2.0	67	92	0	229	36	16	32	15	1.90
1566201--1566274	34	2.2	34	83	9	89	37	28	13	20	1.90
1569596--1569629	17	2.0	17	100	0	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1572777--1572900	65	1.9	65	86	5	178	30	10	14	44	1.79
1594501--1594567	29	2.3	29	76	2	73	34	19	11	34	1.88
1599599--1599645	22	2.1	23	84	11	62	48	14	6	29	1.69
1611266--1611346	30	2.5	33	81	18	91	43	0	1	55	1.07
1611271--1611332	23	2.8	22	78	7	63	38	0	1	59	1.07
1615402--1615518	58	2.0	58	95	3	209	35	10	17	35	1.84
1623403--1623427	9	2.8	9	100	0	50	8	12	0	80	0.92
1642135--1642190	29	2.0	29	86	10	80	32	10	3	53	1.53
1643469--1643493	2	12.5	2	100	0	50	48	0	0	52	1.00
1646648--1646819	49	3.5	48	81	3	175	41	26	6	25	1.79

Tables:   1   2   3   4   5   6