genome.fa.s24.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397277.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_2.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2651878

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 676 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2350658--2350708	21	2.4	21	86	0	75	31	21	7	39	1.82
2353170--2353237	30	2.2	32	78	19	83	35	10	20	33	1.87
2364195--2364243	20	2.6	19	87	6	64	55	0	2	42	1.11
2364200--2364259	17	3.5	17	80	11	61	51	0	0	48	1.00
2365762--2365793	15	2.1	15	94	0	55	31	31	6	31	1.82
2383875--2383903	2	14.5	2	100	0	58	51	0	0	48	1.00
2389531--2389576	19	2.7	16	90	10	65	60	4	0	34	1.16
2394053--2394116	32	2.0	32	87	0	92	32	20	10	35	1.87
2395363--2395389	3	9.0	3	100	0	54	66	0	0	33	0.92
2405064--2405094	16	1.9	16	93	0	53	41	6	0	51	1.27
2413859--2413905	22	2.2	22	88	3	69	23	10	21	44	1.83
2413895--2413943	22	2.2	22	81	0	62	28	12	16	42	1.84
2413955--2414021	23	2.9	23	84	0	71	34	23	8	32	1.86
2413973--2414040	23	3.0	23	82	4	66	33	25	10	30	1.89
2414358--2414470	60	1.9	60	87	3	165	36	23	8	31	1.85
2418019--2418146	47	2.7	47	81	2	132	35	9	18	36	1.83
2440306--2440376	32	2.2	32	89	0	115	29	23	16	29	1.97
2443894--2443950	30	1.9	30	85	7	80	35	10	17	36	1.84
2444776--2444948	48	3.6	47	73	11	147	36	11	14	36	1.82
2457521--2457620	50	2.0	50	98	0	191	43	20	15	22	1.88
2466311--2466441	49	2.6	48	82	8	140	36	23	10	29	1.89
2471101--2471130	13	2.3	13	94	0	51	26	10	23	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2471269--2471414	68	2.1	68	82	0	166	35	8	20	34	1.84
2471142--2471380	127	1.9	127	79	1	273	34	12	18	34	1.88
2492647--2492714	32	2.1	32	86	0	91	38	19	25	17	1.93
2503441--2503476	14	2.6	15	83	16	51	41	0	11	47	1.39
2504305--2504353	20	2.5	19	83	3	53	38	6	2	53	1.38
2502846--2505568	939	2.9	933	87	3	3895	35	13	13	37	1.84
2508382--2508467	2	43.0	2	80	0	73	44	6	5	43	1.55
2515277--2515302	2	13.0	2	100	0	52	50	0	0	50	1.00
2522978--2523079	29	3.6	29	85	2	127	17	30	9	42	1.82
2522957--2523075	58	2.1	57	82	1	139	17	30	10	42	1.82
2530207--2530261	26	2.1	27	86	3	76	30	14	18	36	1.91
2532010--2532043	3	11.7	3	93	6	61	70	0	0	29	0.87
2534042--2534085	19	2.2	20	80	11	56	75	4	0	20	0.98
2534264--2534317	24	2.2	24	87	6	74	38	24	18	18	1.93
2535901--2535996	29	3.3	29	86	0	129	16	27	9	46	1.77
2542538--2542570	15	2.1	16	94	5	59	24	12	12	51	1.73
2553474--2553626	35	4.4	35	93	0	252	26	13	28	31	1.93
2558168--2558200	8	4.2	8	88	7	50	21	0	3	75	0.93
2558463--2558518	15	3.8	15	88	2	78	37	8	21	32	1.84
2558670--2558816	26	5.4	28	73	13	128	35	3	0	61	1.13
2558714--2558789	32	2.4	32	80	2	91	38	2	0	59	1.12
2558758--2558812	22	2.5	22	77	11	60	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2558763--2558812	15	3.5	14	76	13	57	36	0	0	64	0.94
2558665--2558889	109	2.0	111	89	5	348	34	4	0	60	1.23
2558665--2558889	110	2.0	110	89	5	346	34	4	0	60	1.23
2558861--2558973	7	13.9	9	66	28	51	31	1	0	66	1.02
2558859--2558923	23	2.8	23	77	13	80	29	0	0	70	0.87
2558894--2559032	15	9.5	15	68	19	80	30	2	0	66	1.08
2558940--2559014	25	3.0	25	75	9	64	29	1	1	68	1.06
2560633--2560658	13	2.0	13	100	0	52	84	0	0	15	0.62
2567637--2567820	73	2.5	73	83	1	208	22	20	17	38	1.93
2572682--2572933	71	3.6	71	83	4	318	43	13	7	34	1.74
2572682--2572933	35	7.2	35	80	4	280	43	13	7	34	1.74
2575493--2575527	12	2.9	12	91	0	52	71	0	0	28	0.86
2575932--2575987	15	3.8	15	88	2	78	32	21	8	37	1.84
2576255--2576288	8	4.2	8	96	0	59	76	2	0	20	0.92
2576255--2576302	16	2.9	16	87	6	60	75	4	2	18	1.07
2576275--2576312	18	2.1	18	85	9	51	73	10	2	13	1.19
2585181--2585209	7	4.3	7	95	4	51	75	0	13	10	1.04
2585170--2585212	14	3.0	14	80	16	52	74	2	13	9	1.16
2585500--2585540	15	2.7	16	81	11	50	70	19	7	2	1.22
2603438--2603681	136	1.8	135	82	7	316	35	13	18	32	1.90
2603596--2603741	60	2.4	60	79	13	149	32	14	19	33	1.92
2603423--2603849	196	2.2	194	91	2	694	35	14	18	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2608508--2608682	74	2.4	74	89	1	262	22	18	16	42	1.89
2614181--2614253	36	2.0	36	91	0	119	27	9	19	43	1.81
2614265--2614340	35	2.2	35	85	0	98	39	3	13	43	1.62
2622437--2622483	26	1.9	23	86	8	58	42	19	10	27	1.84
2622384--2622600	81	2.7	81	81	6	244	43	12	10	33	1.78
2622541--2622602	30	2.1	29	90	3	97	38	9	12	38	1.77
2633966--2633992	4	6.8	4	100	0	54	51	22	0	25	1.48
2635126--2635292	68	2.5	68	81	0	181	39	16	8	34	1.80
2642368--2642439	29	2.5	29	93	0	117	43	11	11	34	1.76
2648355--2651450	171	18.1	170	79	5	2879	35	12	13	38	1.83

Tables:   1   2   3   4   5   6

The End!