genome.fa.s5.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397258.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11097736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  14  of  22  ( 2636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7097947--7098020	23	3.1	23	81	18	89	32	0	0	67	0.91
7097955--7098028	21	3.5	22	82	14	93	31	0	0	68	0.89
7097957--7098029	23	3.4	22	74	12	71	31	0	0	68	0.90
7097878--7098106	113	2.0	114	93	0	388	32	4	1	61	1.24
7098044--7098109	15	4.1	15	73	19	53	30	6	1	62	1.29
7098182--7098225	5	8.4	5	80	9	52	22	0	0	77	0.77
7098120--7098225	27	4.1	24	71	17	70	26	1	1	69	1.09
7098177--7098224	11	4.4	11	80	15	55	20	0	0	79	0.74
7098177--7098225	16	3.0	16	85	8	64	22	0	0	77	0.77
7098123--7098231	24	4.5	24	71	17	82	27	1	1	68	1.10
7098636--7098668	15	2.1	16	94	5	59	27	18	21	33	1.96
7104707--7104737	7	4.6	7	96	4	55	9	0	0	90	0.46
7104908--7104933	9	2.9	9	100	0	52	88	0	0	11	0.52
7104966--7105024	21	2.8	21	82	7	75	64	0	0	35	0.94
7105095--7105172	31	2.5	30	82	16	97	41	7	0	51	1.31
7115793--7115842	14	3.5	15	86	8	77	42	0	0	58	0.98
7115793--7115854	29	2.2	29	80	13	76	43	3	0	53	1.17
7116000--7116031	15	2.1	15	94	0	55	68	0	0	31	0.90
7126140--7126321	90	2.0	90	98	0	355	35	18	12	33	1.88
7139848--7139901	12	4.5	12	85	0	63	33	0	14	51	1.43
7139851--7139907	8	7.4	8	84	7	64	31	0	15	52	1.43
7139855--7139885	4	7.8	4	100	0	62	25	0	22	51	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7145649--7145709	25	2.4	26	81	8	63	26	27	16	29	1.97
7145768--7145838	27	2.6	27	76	6	63	21	28	16	33	1.95
7146080--7146268	94	2.0	94	95	0	342	25	26	22	24	2.00
7151461--7151507	21	2.2	22	77	11	53	68	0	0	31	0.90
7153346--7153417	35	2.1	34	89	7	110	59	8	0	31	1.27
7153357--7153431	35	2.2	35	83	7	91	58	12	1	28	1.42
7156741--7157312	190	3.0	190	99	0	1126	30	20	14	33	1.93
7159300--7159331	2	16.0	2	93	0	55	46	0	3	50	1.17
7160050--7160075	2	13.0	2	100	0	52	50	0	0	50	1.00
7163380--7163412	17	1.9	17	100	0	66	24	18	9	48	1.76
7164622--7164704	38	2.2	39	91	2	132	16	16	21	44	1.86
7172477--7172512	14	2.7	13	87	8	54	66	0	5	27	1.13
7181383--7181408	13	2.0	13	100	0	52	30	0	0	69	0.89
7185695--7185734	20	2.0	20	85	9	55	50	2	0	47	1.14
7194492--7194644	76	2.0	75	83	3	191	31	13	15	40	1.85
7196595--7196653	28	2.1	28	87	6	84	32	1	18	47	1.59
7211606--7211643	20	1.9	20	88	0	58	44	0	0	55	0.99
7211840--7211893	22	2.5	22	80	14	58	46	0	1	51	1.11
7215057--7215099	16	2.6	16	82	13	52	0	18	2	79	0.85
7215822--7215849	2	14.0	2	100	0	56	50	0	0	50	1.00
7217139--7217175	19	1.9	19	89	10	58	51	0	0	48	1.00
7222884--7223364	160	3.0	161	94	0	838	18	19	18	43	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7231971--7232012	21	2.0	21	86	9	59	45	9	0	45	1.36
7242464--7242510	19	2.4	19	85	7	58	36	2	2	59	1.21
7257679--7257708	2	15.0	2	92	0	51	46	3	0	50	1.18
7261770--7261853	43	2.0	43	95	0	150	44	11	11	32	1.78
7266741--7266807	20	3.3	20	67	29	61	59	17	17	4	1.53
7266726--7266818	40	2.3	40	90	1	152	55	16	22	5	1.61
7271926--7271971	23	2.0	23	100	0	92	43	4	21	30	1.72
7274649--7274673	4	6.2	4	100	0	50	24	0	76	0	0.80
7285722--7285765	21	2.0	21	82	4	52	47	0	2	50	1.13
7285495--7286241	409	1.8	403	83	3	978	38	9	10	40	1.73
7287293--7287321	2	14.5	2	100	0	58	51	0	0	48	1.00
7288089--7288150	13	4.6	13	73	18	56	70	0	1	27	0.96
7288208--7288247	18	2.3	17	86	4	53	67	0	2	30	1.04
7298310--7298371	28	2.2	29	81	13	78	33	3	0	62	1.11
7303943--7304192	120	2.1	121	87	2	351	26	18	17	38	1.92
7316547--7316582	2	18.0	2	100	0	72	50	0	0	50	1.00
7318397--7318458	32	1.9	33	90	3	99	43	16	1	38	1.57
7318488--7318521	17	2.0	16	88	11	50	47	0	0	52	1.00
7318472--7318574	25	4.1	25	74	23	76	51	0	0	48	1.00
7318472--7318528	22	2.6	20	73	15	51	49	0	0	50	1.00
7318498--7318602	30	3.6	30	81	2	124	55	0	1	42	1.11
7319643--7319683	18	2.3	18	91	0	64	26	0	0	73	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7319827--7319868	16	2.6	16	84	3	57	2	19	0	78	0.86
7320766--7320906	74	1.9	74	89	1	221	48	5	3	41	1.44
7321909--7321983	21	3.4	21	70	21	55	61	0	1	37	1.05
7322016--7322046	16	1.9	16	93	0	53	51	0	0	48	1.00
7330518--7330562	23	2.0	22	87	8	65	40	2	8	48	1.47
7351637--7351979	169	2.0	170	98	1	661	32	11	7	48	1.67
7359544--7359596	9	5.9	9	88	0	61	50	33	15	0	1.44
7359537--7359596	18	3.3	18	78	0	57	48	35	15	1	1.55
7368195--7368252	28	2.1	28	100	0	116	20	34	10	34	1.87
7377507--7377578	28	2.6	28	82	10	94	37	9	11	41	1.74
7377580--7377778	29	7.0	28	78	5	202	42	10	11	36	1.75
7377580--7377779	57	3.5	57	80	2	222	42	10	11	36	1.75
7377577--7377775	86	2.3	85	83	6	233	42	10	11	35	1.75
7382309--7382704	68	5.8	68	84	3	458	34	19	11	34	1.87
7382421--7382527	31	3.3	30	68	23	81	32	19	11	36	1.87
7384847--7384881	17	1.9	19	88	11	56	28	0	5	65	1.15
7397114--7397225	60	1.9	60	89	7	178	55	18	1	24	1.52
7398907--7399046	61	2.3	61	81	4	169	35	10	12	40	1.78
7400677--7400723	19	2.7	18	84	15	55	23	2	6	68	1.24
7400667--7400716	14	3.7	13	75	24	50	24	0	8	68	1.16
7408564--7408605	21	2.0	20	86	13	59	33	2	21	42	1.66
7411576--7411696	27	4.5	26	75	8	82	42	11	6	39	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7411596--7411764	54	3.1	53	76	5	169	42	14	7	36	1.73
7411596--7411721	27	4.6	27	82	2	144	42	11	7	37	1.71
7411570--7411767	54	3.7	52	74	12	159	42	14	6	35	1.72
7413324--7413361	19	2.1	18	85	9	51	39	0	0	60	0.97
7414213--7414362	65	2.2	68	82	10	184	40	2	2	54	1.28
7414213--7414378	68	2.5	65	81	7	183	41	3	3	52	1.32
7414381--7414470	29	3.2	29	72	20	100	45	2	0	52	1.13
7417862--7417936	39	1.9	39	86	5	107	57	8	2	32	1.42
7417871--7417934	19	3.3	19	67	4	56	54	7	3	34	1.45
7418549--7418576	8	3.5	8	100	0	56	25	14	25	35	1.93
7424007--7424049	21	2.0	21	100	0	86	37	4	18	39	1.72
7430895--7430922	2	14.0	2	100	0	56	50	0	0	50	1.00
7443584--7443611	1	28.0	1	100	0	56	0	0	0	100	0.00
7447026--7447062	14	2.9	13	85	14	51	62	0	37	0	0.96
7460833--7460933	42	2.4	42	83	5	114	51	0	2	44	1.23
7460894--7460949	28	2.0	28	92	0	94	51	1	0	46	1.11
7460834--7460933	21	4.7	21	68	16	80	52	1	3	44	1.23
7460894--7460969	28	2.7	27	82	8	73	57	1	0	40	1.07
7464232--7464257	4	6.5	4	100	0	52	0	0	23	76	0.78
7479427--7479460	2	17.0	2	93	0	59	0	47	0	52	1.00
7491766--7491956	23	8.3	23	74	4	143	24	32	11	30	1.91
7491792--7492204	46	8.6	46	70	11	184	25	34	11	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7491987--7492062	23	3.3	23	90	0	116	25	38	9	27	1.86
7492083--7492204	23	5.3	23	80	2	129	26	34	11	27	1.91
7492233--7492285	23	2.3	23	86	0	79	26	39	9	24	1.86
7492295--7492333	18	2.2	18	95	0	69	25	23	12	38	1.90
7496128--7496158	2	15.5	2	100	0	62	48	0	0	51	1.00
7505887--7505926	20	2.0	20	90	4	64	12	5	20	62	1.48
7509775--7509804	2	15.0	2	100	0	60	50	0	0	50	1.00
7511788--7511848	25	2.4	25	76	17	63	21	11	1	65	1.33
7513321--7513353	15	2.3	15	89	5	50	30	0	15	54	1.41
7521756--7522613	432	2.0	432	94	0	1509	38	16	16	27	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22