genome.fa.s5.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397258.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11097736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  20  of  22  ( 2636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9732644--9732709	22	3.0	22	84	0	87	45	22	12	19	1.83
9733063--9733153	38	2.4	38	84	0	128	28	8	34	28	1.87
9744243--9744556	29	11.0	28	79	7	319	37	13	10	38	1.79
9744243--9744556	86	3.7	83	78	10	289	37	13	10	38	1.79
9744199--9744556	57	6.2	57	79	7	343	38	12	10	37	1.78
9746553--9746590	18	2.1	18	100	0	76	26	31	10	31	1.90
9748935--9749166	30	7.8	30	74	2	182	35	12	18	33	1.89
9748979--9749069	29	3.1	28	72	9	83	36	13	19	30	1.90
9748935--9749160	59	3.8	59	81	3	229	34	12	19	34	1.89
9748994--9749166	89	1.9	89	83	6	226	35	12	18	33	1.89
9749928--9750400	244	1.9	245	84	1	626	35	15	18	30	1.92
9754691--9754851	76	2.1	75	84	5	200	37	7	13	42	1.72
9756967--9757084	44	2.8	42	80	5	103	24	15	25	34	1.94
9757012--9757169	42	3.7	42	81	2	183	24	17	22	36	1.95
9763698--9763735	20	1.9	20	88	0	58	42	2	0	55	1.14
9763698--9763736	18	2.1	19	85	9	53	41	2	0	56	1.13
9769731--9769938	68	3.1	67	83	2	254	37	11	17	33	1.86
9769731--9769991	68	3.9	68	81	3	249	38	11	17	32	1.86
9770202--9770265	31	2.0	32	82	8	78	31	17	26	25	1.97
9771803--9771836	12	2.8	12	81	0	50	70	0	11	17	1.16
9776143--9777599	727	2.0	727	93	1	2474	33	19	15	31	1.93
9802101--9802150	26	1.9	26	88	8	75	48	2	0	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9803628--9803667	19	2.1	19	90	0	62	42	27	7	22	1.80
9809935--9809975	20	2.0	20	85	0	55	26	2	7	63	1.33
9826334--9826461	28	4.4	28	74	7	105	40	7	9	42	1.64
9826334--9826460	58	2.2	58	83	8	152	40	7	9	42	1.64
9841580--9841765	80	2.4	78	79	4	187	24	19	22	33	1.97
9872709--9872744	9	4.0	9	88	0	54	30	13	30	25	1.94
9875948--9876004	20	2.8	20	78	0	60	38	17	15	28	1.91
9877119--9877311	80	2.4	80	81	4	212	23	17	25	33	1.96
9879223--9879259	19	1.9	19	89	10	58	32	5	0	62	1.18
9882113--9882272	76	2.1	76	88	0	230	34	8	16	41	1.78
9897093--9897117	13	1.9	13	100	0	50	44	0	16	40	1.47
9897486--9897528	18	2.4	18	84	0	50	48	2	4	44	1.36
9897503--9897534	16	2.0	16	93	0	55	46	0	6	46	1.27
9899402--9899445	3	14.7	3	90	0	70	36	27	0	36	1.57
9900962--9901003	22	1.9	22	90	0	66	30	2	38	28	1.70
9900975--9901025	14	3.4	14	76	23	59	27	3	41	27	1.73
9901291--9901315	10	2.5	10	100	0	50	16	0	8	76	1.02
9901285--9901319	11	3.2	11	88	12	54	25	0	8	65	1.21
9901859--9901932	21	3.5	21	87	3	69	27	18	21	32	1.97
9901876--9901947	21	3.4	21	92	0	117	26	16	20	36	1.94
9903906--9903990	3	28.3	3	82	0	89	35	4	30	29	1.78
9903899--9903967	12	6.0	12	80	10	72	36	2	28	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9909205--9909251	21	2.3	20	88	3	67	61	12	2	23	1.42
9915796--9915898	35	2.9	37	76	7	113	33	10	24	31	1.89
9915795--9915917	36	3.5	35	75	5	113	33	12	22	31	1.91
9918235--9918281	19	2.4	20	82	7	69	14	19	23	42	1.88
9921273--9921479	73	2.8	73	88	0	297	22	21	14	41	1.89
9922382--9922438	24	2.4	24	88	2	80	49	5	19	26	1.69
9925143--9925213	35	2.0	36	83	2	90	32	14	23	29	1.94
9930395--9930477	43	1.9	43	87	4	123	46	14	16	21	1.83
9930966--9931102	28	4.8	28	69	13	91	31	12	24	32	1.92
9936704--9936889	54	3.5	55	80	8	161	36	12	13	37	1.83
9936800--9936938	54	2.6	54	86	2	181	35	15	16	32	1.90
9937807--9937840	12	2.9	12	91	4	52	26	5	5	61	1.42
9938165--9938189	5	5.0	5	100	0	50	80	0	0	20	0.72
9942649--9942693	23	2.0	21	83	8	54	46	13	13	26	1.80
9949037--9949074	20	1.9	19	89	5	58	28	0	10	60	1.30
9949745--9949780	12	2.9	13	88	12	58	41	16	41	0	1.48
9955131--9955174	21	2.0	22	86	4	63	29	0	9	61	1.27
9955829--9955862	12	2.8	13	86	13	54	41	17	41	0	1.50
9958447--9958586	29	4.8	28	78	10	145	37	12	11	38	1.80
9958426--9958591	29	5.6	28	75	11	136	38	12	10	38	1.77
9959010--9959091	39	2.1	39	95	0	146	28	18	21	31	1.97
9960268--9960452	73	2.5	74	83	2	212	24	19	12	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9960842--9960876	17	2.1	17	88	0	52	14	37	17	31	1.89
9965019--9965163	21	6.9	20	82	9	130	27	7	17	46	1.75
9965129--9965180	21	2.3	23	83	6	63	30	5	13	50	1.65
9965319--9965357	20	2.0	20	89	0	60	43	10	15	30	1.80
9965958--9965982	12	2.1	12	100	0	50	76	0	0	24	0.80
9979387--9979428	18	2.4	16	85	14	57	54	11	4	28	1.57
9988330--9988368	16	2.4	16	83	8	53	84	0	15	0	0.62
9988330--9988369	6	6.3	6	83	11	53	82	0	17	0	0.67
9989053--9989093	21	2.0	20	90	4	64	29	4	2	63	1.28
9991548--9991621	31	2.4	31	88	2	114	41	20	4	33	1.71
10002112--10002189	40	2.0	40	92	0	129	34	20	21	23	1.97
10006435--10006501	31	2.2	31	94	0	116	53	17	5	22	1.65
10009931--10010115	35	5.3	34	81	7	203	46	14	5	32	1.69
10009931--10010085	71	2.2	71	84	3	206	46	13	5	34	1.67
10013697--10013795	35	2.9	35	83	4	132	43	14	9	33	1.76
10018308--10018342	19	1.9	18	88	11	54	34	14	11	40	1.82
10020411--10020629	36	6.3	36	81	7	231	45	15	5	33	1.70
10022876--10023019	77	1.9	75	89	2	225	41	9	9	39	1.70
10030201--10030236	19	1.9	18	94	5	63	83	0	16	0	0.65
10030195--10030246	22	2.4	21	78	9	59	78	5	13	1	1.01
10036646--10036675	11	2.8	11	95	5	53	0	16	0	83	0.65
10036646--10036675	16	1.9	15	93	6	51	0	16	0	83	0.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10044530--10044710	87	2.1	87	92	2	301	24	19	9	46	1.80
10048564--10048630	33	2.1	32	91	2	107	35	4	16	43	1.68
10055463--10055492	12	2.5	12	94	0	51	83	0	0	16	0.65
10060564--10060597	16	2.1	16	94	0	59	32	0	2	64	1.08
10061628--10061671	19	2.3	19	84	7	54	15	2	2	79	0.93
10068404--10068439	14	2.6	14	86	0	54	2	25	0	72	0.98
10069419--10069772	174	2.0	174	91	0	564	27	19	13	39	1.89
10071609--10071663	26	2.1	26	83	6	67	47	10	1	40	1.49
10071627--10071714	36	2.4	36	96	0	158	47	11	5	35	1.63
10073910--10073942	17	1.9	17	93	0	57	39	21	0	39	1.53
10096654--10096689	5	7.2	5	96	0	54	19	0	5	75	1.00
10107170--10107364	73	2.7	72	75	7	196	22	24	16	35	1.95
10115513--10115571	22	2.7	22	91	0	91	30	23	10	35	1.88
10115535--10115719	73	2.5	72	75	7	176	26	23	14	36	1.93
10126915--10126952	19	2.1	18	90	5	58	31	2	5	60	1.33
10129696--10129720	3	8.3	3	100	0	50	32	36	0	32	1.58
10133215--10133272	30	1.9	30	82	6	73	34	12	22	31	1.91
10144658--10145031	188	2.0	188	100	0	748	34	16	23	25	1.95
10157993--10158027	18	2.0	17	88	5	52	45	17	5	31	1.71
10161087--10161141	25	2.2	25	90	0	83	29	27	12	30	1.93
10161700--10161740	22	1.9	22	85	5	57	36	7	12	43	1.70
10164529--10164584	8	7.0	8	85	6	69	66	1	32	0	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10168676--10168721	24	1.9	24	82	8	58	60	8	19	10	1.55
10168957--10169008	26	2.0	26	100	0	104	53	7	23	15	1.67
10184619--10184657	6	6.5	6	93	0	69	48	0	17	33	1.48
10192659--10192704	22	2.1	22	84	15	60	39	10	10	39	1.76
10192944--10193030	21	4.1	21	84	0	102	36	4	14	43	1.67
10192944--10193030	42	2.1	42	84	4	113	36	4	14	43	1.67
10193173--10193220	21	2.3	21	85	0	69	35	14	18	31	1.91
10194573--10194764	72	2.6	71	78	6	163	22	17	16	44	1.87
10195112--10195196	28	3.0	28	85	0	116	27	15	24	32	1.95
10195685--10195744	29	2.1	29	90	3	95	30	6	16	46	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22