genome.fa.s5.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397258.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_4.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11097736

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   

This is table  21  of  22  ( 2636 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10199908--10199965	23	2.4	23	82	5	71	31	6	10	51	1.62
10201268--10201866	60	9.9	60	75	5	424	38	14	10	37	1.80
10201223--10201867	180	3.6	179	76	7	471	37	14	10	37	1.80
10202665--10202702	19	2.0	19	100	0	76	31	5	21	42	1.75
10209884--10209948	28	2.3	28	97	0	121	29	12	26	32	1.92
10213728--10213753	10	2.6	10	100	0	52	23	38	11	26	1.89
10219426--10219480	8	7.0	8	83	10	69	0	32	1	65	1.03
10219426--10219467	22	1.9	22	90	0	66	0	30	0	69	0.89
10225137--10225182	23	2.0	22	84	12	58	34	4	19	41	1.71
10225612--10225642	4	8.0	4	92	7	55	25	0	0	74	0.82
10228547--10228602	21	2.6	23	75	13	64	53	0	0	46	1.00
10229234--10229271	20	1.9	20	84	10	51	65	2	0	31	1.06
10229252--10229327	34	2.2	34	88	4	109	60	10	0	28	1.30
10235197--10235231	12	2.9	12	84	16	54	5	34	17	42	1.73
10251792--10251835	17	2.6	16	78	21	54	75	2	9	13	1.14
10252348--10252373	12	2.2	12	100	0	52	15	0	7	76	0.99
10253865--10253913	18	2.6	19	80	6	55	57	16	0	26	1.40
10255949--10256002	20	2.6	21	91	2	83	27	16	20	35	1.94
10261620--10261669	24	2.1	24	96	0	91	24	6	22	48	1.73
10275303--10275357	24	2.3	24	84	6	67	60	7	3	29	1.41
10275314--10275369	24	2.3	24	75	0	58	60	8	3	26	1.43
10283313--10283351	18	2.2	18	86	9	53	71	5	23	0	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10291635--10291830	74	2.7	73	79	7	218	45	15	17	21	1.84
10295051--10295099	24	2.0	24	100	0	98	22	16	24	36	1.94
10298267--10298348	43	1.9	43	97	0	155	37	10	12	39	1.78
10320776--10320903	43	3.0	43	83	4	161	17	2	19	60	1.46
10330724--10330850	68	1.9	68	84	0	173	33	20	9	36	1.85
10330741--10330880	68	2.1	67	85	5	183	35	17	10	35	1.85
10331895--10331968	21	3.6	21	71	12	64	39	13	12	35	1.82
10332128--10332174	16	2.8	17	87	6	69	76	2	2	19	0.99
10334447--10334485	21	1.9	20	85	15	53	33	5	15	46	1.68
10353972--10354040	31	2.2	32	86	2	95	20	28	24	26	1.99
10354170--10354353	68	2.7	68	82	1	199	34	19	8	37	1.83
10354170--10354378	68	3.1	68	82	0	193	34	18	8	38	1.81
10355707--10355746	21	1.9	21	89	0	62	35	10	20	35	1.86
10363538--10363564	14	1.9	14	100	0	54	48	0	0	51	1.00
10368921--10369142	114	1.9	114	89	0	345	38	16	14	30	1.89
10376483--10376513	15	2.1	15	100	0	62	29	0	32	38	1.57
10380763--10380805	19	2.3	19	92	4	70	53	0	2	44	1.13
10382596--10382647	25	2.1	24	85	3	68	25	17	28	28	1.97
10386423--10386458	13	2.8	13	100	0	72	16	22	30	30	1.96
10386729--10386754	2	13.0	2	100	0	52	50	0	0	50	1.00
10403592--10403665	23	3.2	23	75	3	69	16	32	20	31	1.94
10410306--10410382	33	2.3	33	81	0	100	31	29	14	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10418865--10419347	241	2.0	240	86	4	677	47	11	22	19	1.80
10429236--10429264	14	2.1	14	100	0	58	20	13	34	31	1.92
10429664--10429820	36	4.4	36	71	4	102	33	17	17	31	1.93
10429665--10429826	72	2.3	72	83	1	209	33	16	19	30	1.94
10431608--10431655	18	2.8	16	79	14	60	33	0	2	64	1.05
10433211--10433972	342	2.2	344	81	6	893	39	8	8	44	1.64
10433983--10434020	20	1.9	20	100	0	76	36	0	0	63	0.95
10434404--10434448	22	2.0	23	91	4	74	60	0	0	40	0.97
10438433--10438470	11	3.5	11	89	3	51	2	31	0	65	1.06
10442443--10442480	20	1.9	20	88	0	58	34	15	15	34	1.90
10457335--10457376	14	2.8	15	86	13	52	26	0	7	66	1.17
10466017--10466103	45	1.9	45	83	4	113	35	3	22	37	1.72
10467030--10467061	9	3.7	9	95	4	57	59	0	31	9	1.29
10470642--10470708	33	2.1	32	88	2	98	43	17	13	25	1.86
10470658--10470726	33	2.2	32	82	15	81	46	18	10	24	1.80
10474497--10474539	15	3.0	15	86	6	54	18	0	13	67	1.23
10474654--10474710	24	2.4	24	83	13	66	43	3	1	50	1.29
10475142--10475206	26	2.6	25	82	2	76	36	4	13	44	1.65
10475263--10475303	20	2.0	20	90	0	64	43	0	7	48	1.30
10475455--10475511	8	7.0	8	74	18	55	47	1	3	47	1.29
10475938--10475962	2	12.5	2	100	0	50	52	0	0	48	1.00
10477955--10477988	17	2.0	17	88	0	50	2	5	14	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10477986--10478116	58	2.3	58	79	0	154	13	9	31	45	1.75
10478776--10478813	15	2.5	15	100	0	76	42	26	5	26	1.76
10486633--10486660	2	14.0	2	100	0	56	50	0	0	50	1.00
10489855--10489890	17	2.1	17	89	0	54	38	0	16	44	1.48
10498171--10498217	25	1.9	24	86	4	67	34	6	12	46	1.67
10505528--10505567	20	2.0	21	85	5	55	47	0	0	52	1.00
10507977--10508010	2	17.0	2	100	0	68	50	0	50	0	1.00
10509484--10509531	24	2.0	24	83	0	60	25	16	27	31	1.97
10509557--10509728	31	5.5	31	83	2	184	30	12	20	36	1.90
10514532--10514575	21	2.0	22	86	4	63	61	9	0	29	1.27
10516810--10517276	76	6.1	76	79	2	409	32	23	16	27	1.96
10516800--10517276	228	2.1	227	82	3	564	31	23	16	27	1.96
10516810--10517276	152	3.1	152	78	0	477	32	23	16	27	1.96
10517855--10518044	93	2.0	95	82	4	233	22	17	23	37	1.94
10520991--10521136	22	6.4	23	81	6	163	35	23	12	28	1.91
10520991--10521136	45	3.2	45	74	8	143	35	23	12	28	1.91
10521373--10521496	63	2.0	63	90	0	194	39	12	26	20	1.89
10526180--10526302	35	3.5	35	78	9	133	39	11	9	39	1.74
10533851--10534054	83	2.6	77	78	6	223	30	17	15	35	1.91
10534004--10534128	66	1.9	66	89	0	196	31	24	17	27	1.97
10534000--10534139	21	6.4	21	67	18	79	30	22	19	27	1.98
10534060--10534163	45	2.3	45	81	0	127	30	21	17	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10535544--10535582	20	1.9	21	84	5	53	46	5	2	46	1.38
10542730--10542797	34	2.0	34	97	0	127	27	20	7	44	1.78
10543207--10543237	11	2.9	11	95	4	55	0	16	0	83	0.64
10543207--10543238	15	2.1	16	94	5	57	0	18	0	81	0.70
10543938--10543972	16	2.1	18	89	10	56	48	22	5	22	1.72
10563816--10563883	32	2.1	32	83	0	82	19	27	17	35	1.94
10565751--10565810	25	2.4	25	88	0	84	30	31	15	23	1.95
10569772--10569804	17	1.9	17	93	0	57	36	6	0	57	1.23
10587949--10587994	22	2.1	22	83	0	56	76	4	2	17	1.06
10588031--10588079	17	2.9	17	78	0	53	73	6	0	20	1.04
10588490--10588558	31	2.2	32	89	7	106	60	0	1	37	1.06
10588491--10588558	32	2.1	31	86	10	93	61	0	1	36	1.05
10589120--10589188	36	1.9	36	87	0	102	42	10	2	44	1.53
10596884--10598058	587	2.0	586	91	1	1917	37	13	16	32	1.87
10598122--10598169	19	2.5	19	100	0	96	35	25	14	25	1.94
10599440--10599479	16	2.5	15	88	8	53	65	17	0	17	1.28
10610753--10610876	35	3.5	35	84	2	167	37	8	11	41	1.72
10610753--10610889	71	1.9	70	89	1	211	39	8	10	40	1.71
10613896--10613938	3	14.3	3	100	0	86	34	0	0	65	0.93
10622360--10622392	2	17.0	2	93	6	59	48	0	0	51	1.00
10622798--10622844	23	2.0	24	83	4	60	55	0	2	42	1.12
10626372--10626418	12	4.0	12	89	10	71	40	17	42	0	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10634426--10634469	21	2.0	22	86	4	63	29	0	9	61	1.27
10634999--10635045	12	4.0	12	86	13	71	42	17	40	0	1.49
10636048--10636123	27	2.8	27	93	2	125	43	18	13	25	1.86
10638248--10638327	38	2.1	38	85	0	106	38	20	13	27	1.90
10645498--10645541	21	2.0	22	86	4	63	29	0	9	61	1.27
10645724--10645834	55	2.0	55	100	0	222	33	16	23	27	1.95
10648946--10648970	6	4.2	6	100	0	50	36	0	0	64	0.94
10650055--10650100	22	2.1	22	100	0	92	56	17	0	26	1.41
10655217--10655325	55	2.0	55	85	3	148	44	10	13	32	1.77
10655217--10655354	55	2.5	54	79	6	134	42	10	13	33	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22