genome.fa.s8.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397261.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_50.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9139585

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  15  of  19  ( 2280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6384169--6384242	30	2.5	30	82	4	87	56	0	1	41	1.07
6405047--6405076	15	2.0	15	93	0	51	30	0	0	70	0.88
6405748--6405796	20	2.5	20	93	3	82	48	2	0	48	1.12
6405759--6405803	10	4.6	10	80	2	56	44	0	0	55	0.99
6405993--6406025	14	2.3	15	94	5	59	51	0	0	48	1.00
6449406--6449441	2	18.0	2	100	0	72	50	0	0	50	1.00
6452069--6452097	3	9.7	3	100	0	58	31	0	0	68	0.89
6462537--6462612	29	2.6	28	81	8	89	59	3	1	35	1.24
6474126--6474164	20	2.0	20	84	0	51	43	2	2	51	1.29
6500499--6500526	2	14.0	2	100	0	56	50	0	0	50	1.00
6506107--6506147	17	2.4	17	91	0	64	39	0	2	58	1.11
6512197--6512223	1	27.0	1	100	0	54	0	100	0	0	0.00
6515071--6515107	2	18.5	2	100	0	74	48	0	0	51	1.00
6515003--6515192	101	1.9	101	97	0	362	32	16	13	36	1.88
6515355--6515385	2	15.5	2	93	0	53	48	3	0	48	1.17
6530623--6530685	19	3.3	19	80	12	67	22	3	0	74	0.96
6531614--6531645	11	2.9	11	95	0	55	31	0	0	68	0.90
6544512--6544616	52	2.0	52	100	0	210	40	7	11	40	1.70
6545169--6545201	15	2.1	16	94	5	59	48	0	6	45	1.27
6552316--6552371	16	3.7	15	73	20	53	60	0	1	37	1.07
6552297--6552359	23	2.8	22	73	15	65	66	0	0	33	0.92
6552279--6552423	46	3.0	47	70	19	111	55	0	1	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6552409--6552467	23	2.5	22	76	15	57	44	0	0	55	0.99
6552395--6552486	28	3.3	27	68	26	75	43	2	0	54	1.12
6558289--6558315	9	3.0	9	100	0	54	11	0	55	33	1.35
6559074--6559109	2	18.0	2	88	0	54	0	44	2	52	1.15
6565731--6565773	9	4.4	9	83	13	50	72	0	0	27	0.85
6566568--6566643	21	3.6	21	77	10	82	51	7	0	40	1.31
6566668--6566719	21	2.5	21	80	0	68	50	9	5	34	1.59
6567338--6567381	20	2.2	20	81	14	56	61	2	2	34	1.21
6568130--6568157	11	2.5	11	100	0	56	14	0	7	78	0.95
6570159--6570188	15	1.9	16	93	6	53	20	10	6	63	1.47
6598316--6598354	20	1.9	21	89	5	62	43	0	0	56	0.99
6598308--6598354	21	2.2	22	85	11	62	44	0	0	55	0.99
6598333--6598398	32	2.1	32	83	11	82	50	0	0	50	1.00
6598747--6598779	2	17.0	2	93	6	59	51	0	0	48	1.00
6598933--6598969	2	18.5	2	100	0	74	51	0	0	48	1.00
6604094--6604220	68	1.9	68	86	0	182	44	5	5	44	1.50
6627416--6627487	27	2.7	26	81	8	90	41	5	13	38	1.68
6644086--6644130	17	2.6	18	80	20	60	48	0	6	44	1.29
6645023--6645049	2	13.5	2	100	0	54	51	0	0	48	1.00
6668217--6668243	4	6.8	4	100	0	54	77	0	0	22	0.76
6670937--6670970	3	11.3	3	100	0	68	67	0	32	0	0.91
6678125--6678395	147	1.8	148	83	5	361	55	3	2	38	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6678301--6678404	41	2.5	41	83	10	113	55	0	0	42	1.12
6678301--6678423	41	2.8	42	75	15	108	56	0	0	41	1.10
6683886--6683924	14	2.8	14	84	0	51	66	2	0	30	1.05
6683876--6683925	18	2.7	19	84	12	68	68	2	0	30	1.01
6694631--6694913	138	2.0	139	89	4	433	30	5	37	26	1.80
6704769--6704795	1	27.0	1	100	0	54	100	0	0	0	0.00
6706813--6706884	21	3.5	21	73	15	62	43	0	0	56	0.99
6710611--6710661	19	2.8	18	79	5	59	76	0	21	1	0.88
6710617--6710659	11	3.6	12	82	17	54	74	0	23	2	0.93
6710752--6710798	19	2.4	20	82	13	62	40	0	0	59	0.97
6710758--6710822	29	2.3	28	76	7	69	43	0	0	56	0.99
6710904--6710957	3	19.7	3	80	17	64	37	0	0	62	0.95
6710906--6710965	18	3.5	18	78	19	74	40	0	0	60	0.97
6710904--6710965	17	3.0	22	71	23	64	40	0	0	59	0.97
6711019--6711068	21	2.4	21	83	6	66	58	0	2	40	1.10
6711009--6711068	23	2.6	23	74	15	61	58	0	1	40	1.08
6717021--6717046	13	2.0	13	100	0	52	30	15	0	53	1.42
6723760--6723801	21	2.0	21	85	4	57	57	4	0	38	1.20
6724075--6724135	26	2.6	24	83	16	83	63	0	0	36	0.94
6724089--6724145	26	2.2	26	84	6	71	64	0	0	35	0.93
6724925--6725083	29	5.6	28	68	21	100	66	0	1	30	1.07
6724925--6725035	55	2.0	55	84	6	145	66	0	1	30	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6725016--6725206	24	8.0	23	68	22	67	66	0	1	31	1.05
6725003--6725091	38	2.3	38	83	7	101	69	1	1	28	1.02
6724934--6725193	86	3.0	85	77	13	216	65	0	1	31	1.09
6725030--6725277	113	2.2	114	90	5	364	64	0	2	32	1.12
6725075--6725273	63	3.4	62	74	19	226	63	1	2	33	1.15
6725128--6725276	21	6.6	22	68	19	85	65	0	2	32	1.09
6725048--6725198	80	1.9	82	80	8	184	66	0	1	31	1.05
6761268--6761440	90	1.9	89	88	3	258	19	45	9	24	1.81
6762185--6762213	2	14.5	2	100	0	58	48	0	0	51	1.00
6769031--6769059	14	2.1	14	100	0	58	62	6	20	10	1.50
6790102--6790145	21	2.0	22	86	4	63	61	9	0	29	1.27
6801371--6801405	2	17.5	2	100	0	70	51	0	0	48	1.00
6831468--6831523	17	3.4	16	79	13	53	37	0	3	58	1.15
6853285--6853317	12	2.8	12	90	4	50	54	15	9	21	1.68
6869263--6869746	29	16.9	28	65	25	112	63	0	2	32	1.13
6869272--6869776	33	15.6	32	65	25	106	63	0	2	33	1.13
6869345--6869746	35	10.7	37	63	24	134	63	0	2	33	1.13
6869394--6869738	78	4.6	76	66	20	197	62	0	2	33	1.15
6869392--6869557	56	3.2	48	70	23	138	63	1	1	33	1.13
6869387--6869831	109	4.0	112	93	4	730	62	0	2	33	1.15
6869387--6869831	222	2.0	220	92	5	747	62	0	2	33	1.15
6869681--6869756	13	5.7	13	75	15	57	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6869568--6869648	30	2.6	30	74	21	60	67	0	1	30	0.98
6869974--6870032	15	3.9	15	79	0	55	32	25	6	35	1.82
6881479--6881503	2	12.5	2	100	0	50	48	0	0	52	1.00
6892965--6892989	7	3.6	7	100	0	50	28	0	48	24	1.52
6914711--6914782	35	2.0	37	83	5	94	13	15	9	61	1.57
6925268--6925310	21	2.0	21	95	0	77	30	37	23	9	1.86
6932051--6932081	2	15.5	2	93	0	53	45	0	3	51	1.17
6950763--6950919	79	2.0	79	84	2	208	16	28	28	26	1.97
6950981--6951031	21	2.4	21	100	0	102	13	11	41	33	1.81
6951500--6951538	20	2.0	20	90	10	62	51	0	0	48	1.00
6960917--6960957	15	2.7	15	92	0	64	29	7	26	36	1.83
6961132--6961334	27	7.6	25	69	20	83	33	2	0	63	1.08
6961119--6961792	15	49.6	14	65	27	156	35	2	0	61	1.12
6961181--6961363	42	4.4	40	73	18	135	33	1	0	65	1.03
6961119--6961757	108	5.9	109	87	10	840	35	2	0	61	1.13
6961160--6961695	29	19.8	26	66	22	152	35	2	0	61	1.12
6961454--6961504	24	2.1	24	82	13	61	41	3	0	54	1.19
6961170--6961770	27	21.9	27	66	22	174	35	2	0	61	1.13
6961169--6961689	20	27.3	19	64	23	63	35	2	0	61	1.12
6961607--6961685	24	3.2	24	77	20	83	36	0	0	63	0.95
6961592--6961755	48	3.2	47	70	24	136	35	1	1	60	1.15
6961729--6961792	21	2.9	22	77	15	69	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6961713--6961889	29	6.1	28	69	19	96	30	1	1	66	1.12
6961724--6961783	18	3.0	20	77	15	54	30	0	0	70	0.88
6961308--6961791	84	5.9	80	68	21	213	35	2	0	61	1.13
6961834--6961893	5	11.4	5	73	16	50	26	1	0	71	0.95
6961841--6961895	14	3.9	14	82	17	69	27	1	0	70	0.97
6961754--6961887	54	2.3	58	74	12	143	29	2	2	65	1.16
6962912--6962951	20	2.0	20	90	0	62	37	10	10	42	1.72
6970473--6970557	34	2.5	34	83	9	120	49	12	11	25	1.75
6971505--6971568	21	3.1	21	71	8	60	31	6	15	46	1.71
6971513--6971577	21	3.1	21	74	10	62	30	7	15	46	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19