genome.fa.s8.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397261.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_50.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9139585

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  8  of  19  ( 2280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2676040--2676181	68	2.1	68	87	7	200	66	0	1	32	1.01
2687088--2687122	17	2.0	18	88	5	54	45	2	5	45	1.41
2687974--2688209	116	2.0	116	97	0	445	23	28	15	31	1.95
2695318--2695416	49	2.0	49	100	0	198	24	16	26	33	1.96
2708070--2708122	26	2.0	26	96	0	97	37	3	16	41	1.67
2713063--2713095	2	17.5	2	87	12	52	48	0	0	51	1.00
2713063--2713095	17	1.9	17	93	0	57	48	0	0	51	1.00
2733372--2733406	13	2.5	14	90	9	54	45	0	0	54	0.99
2737270--2737304	2	17.0	2	88	5	52	45	0	2	51	1.16
2737714--2737748	2	18.0	2	94	5	63	51	0	0	48	1.00
2738947--2738973	13	2.1	13	100	0	54	48	7	7	37	1.59
2741469--2741508	8	5.0	8	93	0	53	50	10	0	40	1.36
2741470--2741508	12	3.2	12	92	0	60	51	7	0	41	1.31
2741478--2741509	2	16.0	2	93	0	55	50	3	0	46	1.17
2750204--2750284	40	2.0	40	95	0	144	24	12	19	43	1.86
2751372--2751453	29	2.8	29	83	3	103	51	14	20	13	1.76
2752557--2752608	26	2.0	26	100	0	104	34	15	7	42	1.75
2753034--2753099	10	6.2	10	78	18	62	77	0	3	19	0.90
2758274--2758298	10	2.5	10	100	0	50	40	48	0	12	1.40
2760798--2760913	57	2.0	57	94	0	205	30	24	9	36	1.87
2769321--2769367	23	2.0	23	100	0	94	29	25	8	36	1.86
2771273--2771308	2	18.0	2	94	0	63	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2773562--2773602	21	2.0	21	85	0	55	0	0	80	19	0.71
2773559--2773604	23	2.0	23	82	0	56	0	0	78	21	0.76
2773586--2773795	33	6.4	31	70	20	124	0	10	80	7	0.93
2773584--2773795	86	2.6	80	76	15	200	0	10	80	7	0.94
2773586--2773713	1	128.0	1	70	0	76	1	10	84	3	0.82
2773586--2773771	53	3.8	48	78	12	171	1	9	82	6	0.90
2773586--2773772	12	15.0	12	73	14	148	1	10	81	6	0.91
2774088--2774144	14	3.9	14	68	8	51	31	35	5	28	1.79
2782064--2782104	21	2.0	21	85	9	57	43	4	9	41	1.59
2788376--2788420	17	2.5	19	82	10	58	42	0	2	55	1.12
2796456--2796480	2	12.5	2	100	0	50	52	0	0	48	1.00
2799541--2799750	102	2.1	102	90	0	330	38	10	17	32	1.85
2800539--2800572	17	1.9	18	88	5	52	23	23	2	50	1.63
2814753--2814779	6	4.5	6	100	0	54	0	33	0	66	0.92
2820432--2820463	2	16.0	2	100	0	64	50	0	0	50	1.00
2824343--2824376	2	17.0	2	100	0	68	50	0	50	0	1.00
2831104--2831171	32	2.1	33	88	2	102	36	16	14	32	1.89
2834253--2834426	27	6.4	27	75	14	144	56	3	0	39	1.16
2834247--2834467	106	2.1	106	86	5	311	55	3	1	39	1.26
2837684--2837715	9	3.4	9	91	8	55	87	0	0	12	0.54
2837686--2837712	10	2.7	10	100	0	54	92	0	0	7	0.38
2849605--2849684	19	3.9	19	67	20	54	41	8	12	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2849653--2849693	19	2.2	19	90	0	64	41	4	14	39	1.67
2852709--2852763	27	2.0	27	85	3	74	50	0	0	49	1.00
2852728--2852768	21	1.9	22	95	5	75	43	0	0	56	0.99
2856561--2856639	40	2.0	40	87	0	113	45	20	10	24	1.81
2861845--2861890	20	2.2	22	84	7	60	32	0	6	60	1.22
2864696--2864720	13	1.9	13	100	0	50	4	48	24	24	1.68
2869144--2869235	39	2.4	39	98	0	175	27	21	20	30	1.98
2872909--2872942	2	17.0	2	87	0	50	47	2	2	47	1.32
2873712--2873738	2	13.5	2	100	0	54	51	0	0	48	1.00
2895436--2895479	13	3.3	13	83	3	52	34	0	4	61	1.16
2895446--2895481	14	2.6	14	86	4	56	36	0	2	61	1.11
2895622--2895662	18	2.3	18	87	4	57	36	2	0	60	1.10
2895620--2895662	19	2.3	19	83	0	59	34	4	0	60	1.17
2898296--2898377	8	9.5	8	71	15	56	21	2	1	74	1.01
2898296--2898343	19	2.5	20	76	10	55	25	2	0	72	0.95
2898296--2898351	20	2.9	19	76	20	55	23	3	0	73	0.99
2913213--2913253	21	2.0	21	100	0	82	56	9	14	19	1.66
2913418--2913462	21	2.1	21	87	0	63	44	8	4	42	1.56
2914513--2914541	2	15.0	2	92	7	51	51	0	0	48	1.00
2917652--2917713	31	2.0	31	96	0	115	45	20	19	14	1.85
2923234--2923377	48	3.0	48	94	0	252	36	21	22	19	1.95
2925216--2925243	11	2.5	11	100	0	56	0	7	0	92	0.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2925306--2925351	15	3.1	15	93	0	74	39	6	21	32	1.79
2925566--2925631	18	3.6	18	78	13	71	30	1	0	68	0.99
2927409--2927474	27	2.4	28	82	2	71	37	13	13	34	1.84
2927460--2927527	31	2.2	31	84	7	86	41	14	19	25	1.89
2927527--2927589	31	2.1	30	84	3	81	36	15	19	28	1.92
2936621--2936649	15	1.9	15	100	0	58	20	3	48	27	1.66
2936861--2936919	27	2.2	27	78	0	64	33	25	11	28	1.91
2942533--2942701	90	1.9	90	96	0	311	37	15	19	27	1.92
2950995--2951021	2	13.5	2	100	0	54	51	0	0	48	1.00
2952798--2952838	21	2.0	21	95	0	73	36	12	14	36	1.84
2962499--2962570	33	2.1	34	87	5	101	62	1	6	29	1.30
2971118--2971187	21	3.3	21	69	15	72	41	0	8	50	1.33
2971061--2971186	57	2.2	57	83	10	152	40	0	7	51	1.35
2971657--2971721	34	1.9	34	93	0	112	27	9	4	58	1.49
2971658--2971732	34	2.2	34	88	4	107	28	8	5	58	1.48
2975665--2975689	11	2.3	11	100	0	50	32	28	8	32	1.86
2976885--2976910	2	13.0	2	100	0	52	50	0	0	50	1.00
2978719--2978787	25	2.5	29	77	22	85	52	1	2	43	1.25
2981379--2981433	21	2.6	21	80	5	58	60	5	1	32	1.30
2983588--2983732	72	2.0	72	85	2	193	37	6	22	33	1.79
2989507--2989571	28	2.3	29	81	5	78	30	1	12	55	1.46
3007673--3007857	63	2.9	63	80	4	212	36	11	16	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008095--3008204	50	2.2	49	83	4	141	34	6	27	31	1.82
3008247--3008328	36	2.3	35	82	2	92	40	13	24	21	1.89
3008311--3008431	61	2.0	61	85	0	161	38	6	27	28	1.82
3008478--3008623	34	4.3	34	74	9	127	36	5	29	28	1.79
3015550--3015578	3	9.7	3	100	0	58	31	0	0	68	0.89
3021711--3021740	13	2.3	13	94	0	51	40	16	16	26	1.90
3032975--3033000	2	13.0	2	100	0	52	0	50	0	50	1.00
3046807--3046852	22	2.1	22	91	0	74	41	13	8	36	1.75
3054851--3054953	51	2.0	51	84	0	134	9	0	86	3	0.69
3054854--3054925	1	72.0	1	88	0	99	4	0	93	2	0.43
3058570--3058665	48	2.0	48	95	0	174	30	26	28	15	1.96
3063381--3063417	19	1.9	19	89	10	58	51	2	0	45	1.15
3066326--3066399	37	2.0	37	84	7	96	36	9	13	40	1.77
3069403--3069478	35	2.2	35	100	0	152	17	22	10	50	1.76
3069613--3069682	19	3.7	20	70	20	60	57	1	1	40	1.17
3070792--3070881	41	2.2	42	84	5	114	16	27	28	26	1.97
3076080--3076443	124	2.9	126	85	4	511	41	1	2	54	1.26
3076164--3076543	42	9.4	39	68	17	174	41	2	2	52	1.29
3076078--3076263	85	2.2	85	80	10	200	41	0	2	55	1.16
3076348--3076583	75	3.1	74	69	24	182	38	3	2	55	1.30
3076417--3076470	27	2.0	27	96	0	99	42	1	3	51	1.30
3076159--3076770	280	2.2	271	87	6	840	40	1	3	53	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3076283--3076645	156	2.3	156	88	2	541	40	2	3	53	1.33
3076366--3076543	22	7.9	23	63	30	57	39	2	2	55	1.25
3076505--3076561	25	2.3	24	78	6	60	40	3	1	54	1.28
3076512--3076874	117	3.2	115	83	6	420	38	1	5	55	1.31
3076574--3076626	27	2.0	26	77	3	52	43	1	7	47	1.42
3076881--3076911	16	1.9	16	93	0	53	48	3	0	48	1.17
3093402--3093452	21	2.4	21	96	0	93	15	9	29	45	1.79
3101690--3101721	2	16.0	2	100	0	64	50	0	0	50	1.00
3109703--3109740	17	2.2	17	86	9	51	71	0	0	28	0.87
3109703--3109758	28	2.0	27	89	3	85	69	0	3	26	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19