genome.fa.s8.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397261.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_50.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9139585

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  3  of  19  ( 2280 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575949--576290	45	7.7	45	85	4	417	18	28	13	39	1.89
575996--576299	132	2.3	134	84	8	397	18	28	13	38	1.89
579406--579579	87	2.0	87	92	2	287	34	16	23	25	1.95
580533--580559	2	13.5	2	100	0	54	48	0	51	0	1.00
586192--586376	71	2.6	72	74	8	191	38	19	14	27	1.90
586881--586919	2	19.5	2	89	0	60	43	0	5	51	1.24
587395--587447	21	2.6	19	80	13	61	5	11	1	81	0.94
587418--587447	12	2.5	12	88	0	51	6	6	3	83	0.90
591880--592000	62	2.0	62	93	0	206	47	14	10	26	1.77
612084--612128	16	2.9	15	87	9	56	40	2	0	57	1.11
612061--612175	38	2.9	42	77	17	129	45	2	0	52	1.14
612100--612175	22	3.5	22	75	8	84	42	1	0	56	1.07
612106--612160	24	2.4	23	81	6	58	38	1	0	60	1.08
612061--612199	43	3.5	42	75	14	132	46	2	0	51	1.18
612383--612416	8	4.1	8	88	3	50	50	0	0	50	1.00
612580--612620	8	5.0	8	83	16	57	58	2	0	39	1.11
612979--613015	18	2.0	20	89	10	60	72	0	27	0	0.84
615961--616012	15	3.5	15	77	17	56	34	0	3	61	1.14
616154--616302	71	2.1	71	91	0	235	32	23	12	30	1.92
616161--616373	71	3.0	70	83	1	228	31	21	14	33	1.93
619068--619106	20	2.0	20	85	10	53	56	12	0	30	1.37
619946--620016	32	2.2	32	87	0	97	25	19	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624540--624601	13	4.8	13	77	16	51	77	0	19	3	0.90
624542--624598	27	2.1	27	83	6	71	78	0	17	3	0.88
624549--624601	11	4.7	11	84	13	56	79	0	18	1	0.83
624547--624601	16	3.2	18	75	17	55	78	0	20	1	0.85
624549--624625	34	2.2	35	84	11	97	77	1	14	6	1.02
631589--631628	14	2.9	14	84	0	53	80	10	5	5	1.02
631591--631642	14	3.6	14	82	5	50	78	7	7	5	1.08
632544--632600	25	2.3	25	87	6	89	26	0	35	38	1.57
640687--640728	22	2.0	22	95	4	77	52	0	0	47	1.00
650125--650446	178	1.8	177	85	4	452	34	15	16	34	1.90
652684--652738	27	2.0	27	100	0	110	30	21	18	29	1.97
656280--656314	2	18.0	2	94	5	63	48	0	0	51	1.00
668709--668847	46	3.0	46	91	0	224	27	28	5	38	1.80
668966--669003	18	2.3	17	86	13	53	26	0	2	71	1.00
669611--669658	15	3.3	15	82	2	62	2	22	0	75	0.91
669605--669647	22	2.0	20	86	8	59	0	23	0	76	0.78
676220--676356	37	3.7	37	85	4	179	34	24	13	27	1.93
676902--676951	21	2.4	21	86	6	66	50	12	8	30	1.68
677024--677081	21	2.7	21	83	2	71	56	10	1	31	1.43
677195--677257	21	3.0	20	73	8	63	47	20	9	22	1.78
691893--692475	150	3.8	150	86	5	792	39	1	2	55	1.23
692047--692103	27	2.2	26	84	6	71	43	0	3	52	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692073--692172	42	2.4	42	85	6	132	44	0	2	54	1.11
692050--692157	22	4.8	22	70	18	71	44	0	2	52	1.15
691983--692182	48	4.0	49	65	18	110	41	0	3	54	1.21
691893--692475	153	3.8	152	87	5	759	39	1	2	55	1.23
692256--692475	42	5.4	41	73	16	174	41	2	0	55	1.16
692100--692316	111	2.0	111	80	3	249	39	1	3	55	1.27
692352--692407	27	2.1	27	90	6	87	44	0	0	55	0.99
692352--692457	26	4.2	26	79	15	89	41	1	0	56	1.10
692204--692489	20	14.0	20	67	23	84	41	2	1	53	1.25
695762--695828	33	2.0	33	100	0	134	35	17	14	31	1.91
698376--698413	19	2.0	19	94	0	67	60	0	18	21	1.36
707444--707513	29	2.4	29	90	2	104	51	5	31	11	1.61
711939--711977	18	2.2	18	86	4	53	48	10	15	25	1.76
713429--713627	68	2.9	68	78	2	202	32	12	22	33	1.90
719195--719386	65	2.9	65	79	4	222	32	9	22	34	1.87
719200--719411	68	3.2	67	78	2	221	33	10	22	33	1.89
726353--726474	59	2.1	57	82	10	140	31	9	14	43	1.78
749268--750415	384	3.0	381	88	2	1699	29	11	21	36	1.89
758200--758321	62	2.0	62	83	3	156	32	14	13	38	1.86
760792--761070	93	3.0	93	97	2	517	25	18	20	35	1.95
768732--768855	31	4.0	31	81	1	149	20	19	2	58	1.51
768719--768850	62	2.1	63	86	5	180	20	18	3	58	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771546--771573	2	14.0	2	100	0	56	50	0	0	50	1.00
775780--775822	19	2.2	19	91	4	68	55	6	0	37	1.27
776334--776367	2	18.0	2	88	11	54	47	0	0	52	1.00
776334--776367	15	2.3	15	100	0	68	47	0	0	52	1.00
776335--776360	13	2.0	13	100	0	52	46	0	0	53	1.00
777329--777573	122	2.0	122	94	0	427	32	22	9	35	1.86
779216--779254	21	1.9	19	85	10	51	25	5	5	64	1.35
780652--780693	6	7.2	6	89	5	50	73	0	26	0	0.83
780652--780693	12	3.6	12	87	3	59	73	0	26	0	0.83
781599--781637	2	19.5	2	100	0	78	51	0	0	48	1.00
784539--784605	28	2.3	28	87	5	89	49	0	1	49	1.10
784539--784624	30	3.0	29	70	14	70	53	0	1	45	1.07
787247--787320	21	3.5	21	88	0	103	37	21	18	21	1.94
789262--789290	3	9.7	3	100	0	58	34	0	31	34	1.58
790993--791022	2	15.0	2	100	0	60	0	0	50	50	1.00
803181--803282	40	2.5	40	91	0	159	29	9	21	39	1.85
803892--803922	6	5.2	6	100	0	62	16	16	67	0	1.23
817125--817163	17	2.3	17	86	8	53	23	12	10	53	1.69
826257--826400	72	2.0	72	94	2	254	34	24	7	34	1.84
828866--828898	17	1.9	17	88	11	50	27	24	0	48	1.51
833153--833191	21	1.9	20	84	5	51	20	15	28	35	1.93
836449--836497	22	2.2	22	85	0	62	30	2	18	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
849460--849502	18	2.3	19	88	4	61	60	2	0	37	1.10
850718--850790	21	3.4	21	80	1	92	27	5	19	47	1.71
850736--850802	21	3.2	20	72	16	55	26	5	16	50	1.68
864498--864543	24	1.9	24	81	0	56	30	23	6	39	1.80
868497--868535	2	19.5	2	94	0	69	48	0	2	48	1.15
877282--877306	12	2.1	12	100	0	50	24	16	16	44	1.86
877884--878038	44	3.5	44	71	13	131	42	7	8	41	1.64
877883--878072	86	2.2	85	86	2	247	43	6	9	40	1.64
885994--886063	24	2.9	25	78	16	67	0	41	0	58	0.98
894068--894982	467	2.0	462	97	1	1715	31	18	18	32	1.94
896514--896564	7	7.3	7	97	0	93	47	25	0	27	1.53
900092--900132	2	20.5	2	100	0	82	48	0	51	0	1.00
904384--904469	33	2.6	33	85	5	102	66	1	3	29	1.16
912364--912404	2	20.5	2	92	0	64	43	0	2	53	1.13
922754--922786	3	11.0	3	93	0	57	69	0	0	30	0.88
936150--936201	21	2.5	22	87	9	81	73	0	0	26	0.84
940825--940896	32	2.1	35	82	12	89	20	1	15	62	1.40
941198--941256	28	2.2	27	85	8	77	44	10	15	30	1.79
946412--946445	3	11.3	3	100	0	68	64	0	0	35	0.94
947054--947465	210	2.0	211	87	2	596	36	11	10	41	1.77
947907--948004	26	3.8	26	71	10	85	38	11	19	30	1.87
948042--948084	17	2.5	17	96	0	77	37	34	4	23	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
948066--948125	28	2.1	28	84	0	75	43	18	11	26	1.84
948118--948155	15	2.6	14	91	8	58	73	0	7	18	1.06
948224--948265	21	2.0	21	100	0	84	28	9	14	47	1.75
952418--952462	23	1.9	24	86	4	65	24	2	2	71	1.09
957226--957268	22	2.0	22	100	0	86	37	9	13	39	1.78
960270--960320	2	25.5	2	100	0	102	50	0	0	49	1.00
960756--960797	2	21.0	2	85	0	57	47	7	0	45	1.30
967716--967742	2	13.5	2	100	0	54	48	0	51	0	1.00
975040--975090	27	2.0	25	92	7	84	49	9	3	37	1.55
987657--987691	16	2.1	17	94	5	63	74	0	0	25	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19