genome.fa.s121.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000121.1 Hibiscus syriacus cultivar Beakdansim tig00000218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2099483

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860150--1860195	23	2.0	23	91	0	74	28	26	23	21	1.99
1860173--1860479	151	2.0	149	96	1	569	36	19	15	28	1.93
1861821--1861982	64	2.5	63	78	10	159	28	18	20	32	1.96
1862942--1862982	20	2.2	19	86	8	57	12	26	0	60	1.31
1864743--1864790	21	2.2	22	85	10	64	47	14	2	35	1.56
1865305--1865350	23	2.0	23	91	0	74	28	26	23	21	1.99
1865328--1865632	149	2.0	149	98	0	583	36	20	15	28	1.93
1880168--1880420	126	2.0	126	98	1	490	36	15	18	29	1.92
1882419--1882459	18	2.3	18	100	0	82	51	21	0	26	1.48
1883012--1883756	200	3.8	200	85	2	986	32	12	14	40	1.84
1886483--1886538	21	2.7	19	76	15	58	25	21	21	32	1.98
1887155--1887192	6	6.5	6	96	3	69	0	15	52	31	1.43
1887310--1887425	21	5.6	21	81	10	130	30	26	20	22	1.98
1887282--1887425	62	2.3	63	85	5	186	31	24	20	23	1.98
1887434--1887571	21	6.6	21	82	11	167	22	21	24	31	1.98
1887310--1887551	83	2.9	84	81	8	239	27	23	21	27	1.99
1887411--1887571	83	1.9	83	94	0	286	23	21	22	32	1.98
1887817--1887859	18	2.4	18	92	0	68	53	0	13	32	1.41
1894923--1894964	22	1.9	22	85	0	57	0	50	0	50	1.00
1895327--1895384	27	2.1	29	93	6	102	48	3	44	3	1.36
1896350--1896449	29	3.4	28	83	6	110	43	11	10	36	1.74
1896547--1896615	29	2.4	29	78	4	77	52	4	5	37	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1900701--1900960	130	2.0	130	90	8	415	34	6	26	32	1.81
1900987--1901063	20	4.0	20	76	6	95	24	22	28	24	1.99
1900986--1901061	38	2.0	38	89	0	116	22	22	28	26	1.99
1901427--1901655	4	57.5	4	87	2	309	30	0	19	49	1.54
1903623--1903648	13	2.0	13	100	0	52	23	30	30	15	1.95
1904035--1904126	18	4.9	18	84	7	121	27	32	22	17	1.96
1905746--1905789	19	2.4	17	85	11	52	20	29	18	31	1.96
1905746--1905790	18	2.4	19	85	10	58	20	28	17	33	1.95
1913190--1913240	2	26.0	2	96	4	95	49	0	0	50	1.00
1914180--1914294	18	6.1	20	82	7	125	21	20	29	28	1.98
1914183--1914293	38	3.0	38	85	5	138	20	19	30	28	1.97
1914661--1914747	4	21.8	4	85	4	122	29	0	20	49	1.49
1915398--1915528	35	3.7	36	84	7	162	36	19	19	25	1.94
1915398--1915539	36	4.0	35	85	6	171	37	19	18	24	1.94
1917168--1917227	23	2.6	23	94	0	102	36	21	16	25	1.94
1917215--1917245	14	2.1	15	94	5	55	32	22	29	16	1.95
1917239--1917280	14	2.9	15	82	13	61	28	21	28	21	1.99
1925849--1925883	2	17.5	2	100	0	70	51	0	0	48	1.00
1931618--1931768	79	1.9	79	93	0	257	35	3	14	46	1.61
1933408--1933486	41	1.9	41	92	0	131	44	5	7	43	1.54
1940358--1940422	3	21.7	3	93	0	112	35	1	0	63	1.04
1953251--1953310	8	7.1	8	75	9	57	83	0	13	3	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953250--1953299	9	5.4	9	83	11	66	86	0	12	2	0.67
1953243--1953324	13	5.9	14	83	13	98	80	0	17	2	0.82
1953243--1953324	29	2.9	27	87	10	112	80	0	17	2	0.82
1954446--1954708	82	3.2	82	90	3	438	28	13	21	36	1.91
1955322--1955869	113	4.8	113	93	0	875	38	13	19	27	1.90
1956120--1956202	3	27.7	3	95	0	148	34	1	0	63	1.02
1958649--1958679	8	3.9	8	100	0	62	38	22	12	25	1.90
1959183--1959232	10	5.0	10	82	0	55	26	30	0	44	1.55
1959269--1959302	9	3.9	9	84	7	52	35	0	2	61	1.11
1959268--1959307	17	2.4	17	95	4	73	35	0	5	60	1.19
1962742--1962782	20	2.0	20	86	9	57	17	21	36	24	1.94
1963160--1963191	13	2.4	14	85	15	50	50	0	12	37	1.41
1963164--1963192	13	2.3	13	94	5	51	51	0	10	37	1.36
1963195--1963245	21	2.4	21	90	0	84	17	45	0	37	1.49
1963247--1963274	14	2.0	14	100	0	56	50	7	7	35	1.57
1965408--1965482	23	3.4	22	83	5	98	21	28	28	22	1.99
1965408--1965482	22	3.4	22	85	5	98	21	28	28	22	1.99
1968170--1968221	27	1.9	27	96	0	95	23	23	23	30	1.99
1968451--1968493	20	2.2	20	86	0	59	34	20	13	30	1.92
1973086--1973140	27	2.0	27	96	0	101	23	23	23	29	1.99
1978040--1978085	24	2.0	24	83	12	60	13	21	41	23	1.88
1981662--1981850	105	1.8	104	89	3	299	32	14	15	37	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2006987--2007336	59	6.0	59	72	12	274	37	10	21	30	1.87
2006979--2007263	117	2.4	117	85	3	394	37	9	20	31	1.86
2006995--2007336	176	1.9	175	82	8	419	38	10	21	30	1.86
2006979--2007298	117	2.7	116	80	7	367	37	9	21	31	1.86
2008309--2008383	34	2.2	34	92	0	123	24	32	9	34	1.87
2020887--2020922	18	2.0	18	88	0	54	38	0	0	61	0.96
2022446--2022484	20	2.0	20	100	0	78	35	17	20	25	1.95
2022448--2022492	20	2.2	20	92	0	72	35	17	17	28	1.93
2036724--2036815	29	3.2	29	71	22	104	32	29	9	28	1.89
2036712--2036799	27	3.2	27	71	23	92	31	30	7	29	1.86
2036712--2036823	56	2.0	56	100	0	224	32	28	8	30	1.88
2038690--2038741	11	4.5	11	76	7	50	19	11	15	53	1.71
2062559--2062588	2	15.0	2	100	0	60	50	0	0	50	1.00
2062588--2062614	2	13.5	2	100	0	54	0	0	48	51	1.00
2071028--2071073	24	1.9	24	86	8	67	47	2	2	47	1.26
2072000--2072049	21	2.4	21	93	0	82	18	32	26	24	1.97
2073061--2073097	20	1.9	19	89	10	58	45	10	24	18	1.81
2073252--2073282	15	2.1	15	93	0	53	54	0	0	45	0.99
2087949--2087974	2	13.0	2	100	0	52	50	0	0	50	1.00
2092003--2092129	51	2.5	50	85	3	166	15	31	33	19	1.93
2092313--2092341	14	2.1	14	93	6	51	20	6	6	65	1.40
2092416--2092619	105	2.0	99	85	7	275	36	8	8	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2093228--2093300	25	3.0	24	68	24	62	26	6	4	63	1.38
2096838--2096943	50	2.2	48	86	11	146	26	22	25	25	2.00

Tables:   1   2   3   4   5   6   7   8   9   10

The End!