genome.fa.s121.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000121.1 Hibiscus syriacus cultivar Beakdansim tig00000218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2099483

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186991--187050	21	2.9	21	94	0	102	25	40	25	10	1.86
190637--190670	3	11.3	3	100	0	68	0	32	0	67	0.91
190825--190858	3	11.3	3	100	0	68	0	32	0	67	0.91
190480--191017	188	2.8	188	96	1	979	28	22	11	36	1.90
191016--191285	3	91.3	3	86	5	300	0	60	0	40	0.97
191316--191553	116	2.0	117	97	0	460	43	16	19	20	1.88
197318--197367	23	2.3	23	80	13	61	48	10	22	20	1.79
198340--198397	30	2.0	30	86	3	82	43	3	10	43	1.55
205334--205373	15	2.7	15	100	0	80	45	7	12	35	1.70
209341--209409	35	1.9	35	82	8	86	37	20	21	20	1.94
210077--210112	18	2.0	18	88	0	54	19	22	33	25	1.97
228009--228068	31	1.9	31	96	0	111	18	8	21	51	1.72
237233--237327	30	3.2	29	91	5	145	29	33	3	33	1.73
239081--239128	18	2.7	18	100	0	96	47	0	4	47	1.21
240185--240275	45	2.0	46	93	2	157	26	19	26	27	1.99
240295--240333	20	2.0	20	89	0	60	20	15	33	30	1.94
243021--243121	44	2.3	44	80	10	109	30	19	25	23	1.98
249038--249075	20	1.9	20	94	0	67	23	15	28	31	1.96
250651--250696	20	2.2	21	84	7	58	47	0	2	50	1.13
250645--250709	27	2.4	26	80	12	78	44	1	3	50	1.26
252442--252544	31	3.4	31	70	20	90	51	3	17	27	1.63
255236--255306	30	2.4	28	81	13	81	42	1	1	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255348--255404	29	2.0	29	82	6	71	38	1	7	52	1.39
255387--255432	20	2.3	20	72	24	51	47	0	0	52	1.00
255392--255455	29	2.3	27	81	7	67	51	1	0	46	1.10
255486--255548	14	4.8	13	72	16	58	34	1	0	63	1.04
255485--255543	17	3.2	17	74	21	55	37	1	0	61	1.07
255495--255596	25	4.2	25	75	10	97	39	0	0	59	1.04
255495--255549	8	7.0	8	74	12	51	36	0	0	63	0.95
257878--258444	105	5.4	105	98	0	1089	23	18	25	33	1.97
258633--258665	1	33.0	1	100	0	66	0	0	0	100	0.00
270313--270637	162	2.0	163	99	0	643	30	30	18	20	1.96
274404--274467	23	2.8	23	90	0	101	35	4	21	37	1.75
274883--274943	21	2.8	23	85	7	83	34	4	22	37	1.76
273984--275814	475	3.9	480	96	2	3359	40	7	11	40	1.69
275354--275416	22	2.8	23	87	4	92	34	4	22	38	1.75
276329--276368	21	1.9	21	89	0	62	55	2	10	32	1.47
276357--276426	30	2.3	31	90	2	106	58	1	2	37	1.22
276485--276527	16	2.5	17	82	17	54	48	0	4	46	1.22
287625--287672	21	2.3	21	92	0	87	29	18	10	41	1.84
295757--295801	22	2.0	22	86	4	63	62	8	15	13	1.54
299620--299677	21	2.7	21	89	5	80	31	17	8	43	1.79
300303--300348	17	2.9	16	78	15	51	50	2	0	47	1.13
300303--300350	16	3.1	15	77	16	53	52	2	0	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302940--302982	2	21.5	2	100	0	86	51	0	0	48	1.00
305348--305442	46	2.1	46	100	0	190	24	27	6	42	1.78
305348--305453	46	2.3	46	93	3	160	24	24	9	41	1.84
307583--307615	13	2.4	14	90	5	50	45	30	0	24	1.53
311786--311912	29	4.4	28	78	7	87	37	3	14	44	1.65
312070--313542	802	1.8	801	96	0	2757	29	16	18	35	1.93
336713--337293	55	10.7	55	88	3	802	29	14	27	28	1.95
336713--337293	218	2.7	218	93	0	975	29	14	27	28	1.95
336706--337293	163	3.6	164	86	4	796	29	14	27	29	1.95
342714--343182	154	3.0	154	97	0	866	19	23	18	38	1.93
343547--343622	36	2.1	36	95	0	134	42	15	10	31	1.81
346330--346407	36	2.2	35	95	2	138	43	14	10	32	1.78
349117--349192	36	2.1	36	97	0	143	43	14	10	31	1.79
351902--351974	36	2.0	36	97	0	137	41	15	10	32	1.82
354688--354763	36	2.1	36	97	0	143	43	14	10	31	1.79
359333--359385	19	2.7	20	91	2	81	16	16	33	32	1.92
361193--361244	19	2.7	19	90	0	86	21	26	19	32	1.97
364404--364443	15	2.7	15	92	0	71	35	22	0	42	1.54
366705--366746	17	2.4	18	84	7	52	40	4	16	38	1.70
368896--369105	65	3.2	64	83	9	225	27	18	22	31	1.97
369439--369490	22	2.4	22	80	3	70	21	42	0	36	1.53
375333--375377	17	2.6	18	82	13	58	17	8	20	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387898--387945	15	3.1	15	77	14	53	72	0	4	22	1.01
388008--388041	17	2.0	17	88	0	50	73	2	0	23	0.97
390433--390460	14	2.0	14	100	0	56	7	14	14	64	1.48
394460--394635	86	2.0	87	93	1	300	32	23	9	34	1.86
398420--398468	23	2.1	23	85	7	64	59	12	2	26	1.44
401727--401797	22	3.1	22	72	18	65	67	1	19	11	1.29
405659--406144	243	2.0	238	94	4	854	27	22	18	31	1.97
408814--408862	23	2.1	23	85	7	64	59	12	2	26	1.44
410721--410767	18	2.6	18	89	0	67	12	23	42	21	1.87
413578--413604	14	1.9	14	100	0	54	44	18	0	37	1.50
415708--415850	60	2.4	60	89	3	209	29	15	8	46	1.75
419013--419063	23	2.3	22	83	6	59	37	0	1	60	1.08
435974--436008	16	2.2	16	100	0	70	62	11	0	25	1.28
440646--440900	39	6.6	39	79	5	160	45	13	7	34	1.71
440646--441259	78	7.8	77	73	12	333	41	14	7	37	1.73
440900--441262	39	9.3	39	75	9	174	38	15	6	39	1.73
441004--441259	39	6.6	39	79	7	254	38	15	6	39	1.73
440744--441065	166	2.0	161	79	10	341	41	13	7	37	1.73
441462--441634	58	3.0	58	80	3	199	47	8	3	41	1.50
441468--441726	58	4.5	57	75	7	197	45	9	5	39	1.58
441900--442024	42	2.8	45	89	4	193	40	11	8	40	1.72
441900--442044	45	3.3	45	87	5	190	42	12	8	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442722--442765	3	14.7	3	100	0	88	65	0	0	34	0.93
446315--446352	15	2.6	15	87	4	60	23	31	23	21	1.98
448832--448888	30	1.9	30	92	0	96	33	8	10	47	1.69
449333--449392	29	2.1	28	90	3	93	33	6	18	41	1.76
450291--450325	14	2.4	15	90	4	54	25	28	22	22	1.99
451827--451862	14	2.5	15	90	4	56	25	22	25	27	2.00
459272--459340	23	3.0	23	86	0	93	27	26	26	20	1.99
459356--459571	103	2.1	104	92	0	362	36	22	13	27	1.92
460941--461000	20	2.9	21	90	7	95	18	26	25	30	1.98
462444--462486	6	6.7	6	80	15	50	16	2	2	79	0.95
462444--462486	13	3.3	12	81	12	50	16	2	2	79	0.95
462444--462486	20	2.2	20	87	4	61	16	2	2	79	0.95
466893--467029	70	2.0	67	94	4	238	39	23	13	23	1.90
478264--478318	18	2.9	19	75	5	58	38	0	3	58	1.16
478274--478312	17	2.2	18	86	4	53	35	0	2	61	1.10
478832--478859	14	2.0	14	100	0	56	50	14	21	14	1.78
479320--480693	457	3.0	466	85	6	1884	29	15	31	23	1.95
484083--484187	48	2.2	48	98	0	201	46	9	6	37	1.63
486063--486544	242	2.0	239	95	4	871	29	18	12	39	1.87
492240--492282	21	2.0	21	81	0	50	30	27	23	18	1.98
492723--492940	103	2.1	103	94	0	400	26	12	23	37	1.91
492957--493008	23	2.3	23	96	0	95	17	32	26	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492957--493019	23	2.7	23	90	0	72	20	28	25	25	1.99
495219--495365	37	4.0	37	94	0	258	40	12	13	32	1.83
495963--496022	25	2.4	25	81	8	70	28	3	0	68	1.05
495974--496080	41	2.6	40	75	10	99	20	2	1	74	1.03
495964--496050	16	5.3	15	72	18	52	24	2	2	71	1.09
495979--496083	19	5.3	19	73	16	72	20	1	1	76	0.98
495994--496087	37	2.6	37	76	8	102	19	3	2	75	1.04
495964--496083	18	6.6	17	68	26	59	20	2	1	75	1.01
496112--496183	27	2.6	27	74	10	74	20	12	1	65	1.33
502883--502940	20	2.7	22	79	15	68	37	24	1	36	1.66

Tables:   1   2   3   4   5   6   7   8   9   10