genome.fa.s121.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000121.1 Hibiscus syriacus cultivar Beakdansim tig00000218_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2099483

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504487--504533	2	23.5	2	100	0	94	51	0	0	48	1.00
504550--504708	85	1.9	83	84	5	212	28	18	21	31	1.97
504688--504737	26	1.9	26	87	0	73	34	14	22	30	1.93
506104--506244	36	3.9	36	86	0	201	27	19	13	39	1.89
506305--506358	21	2.5	22	84	3	65	20	14	14	50	1.78
506271--506395	58	2.2	58	85	4	164	23	18	14	44	1.86
506328--506415	37	2.4	38	90	5	144	25	19	13	42	1.88
506468--506621	33	4.6	33	87	9	213	38	21	10	29	1.86
506614--506773	84	1.9	86	88	2	243	35	26	18	19	1.95
507390--507495	36	2.9	36	92	2	167	38	12	16	32	1.86
508062--508226	9	17.8	9	67	21	65	23	2	1	72	1.03
508033--508165	39	3.4	38	75	16	130	27	2	0	69	1.06
508060--508225	46	3.6	45	74	14	126	23	2	1	72	1.03
508457--508557	3	33.3	3	79	5	105	39	2	0	57	1.14
508447--508520	12	6.7	11	75	14	55	40	1	0	58	1.07
509987--510030	13	3.4	13	82	17	56	29	0	2	68	1.02
509981--510030	25	2.0	26	88	11	77	28	0	4	68	1.08
510023--510049	3	9.0	3	100	0	54	33	0	0	66	0.92
518442--518613	75	2.3	75	80	5	195	27	16	23	31	1.96
519895--519991	22	4.5	22	88	2	135	35	13	13	38	1.84
520568--520592	12	2.1	12	100	0	50	40	0	36	24	1.55
520791--520952	64	2.5	65	76	8	161	31	21	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521735--522055	103	3.1	103	94	0	570	27	13	23	35	1.92
522065--522138	23	3.3	23	81	3	80	24	20	22	32	1.98
527678--527996	102	3.1	103	97	1	597	26	13	23	36	1.92
529854--530399	73	7.5	73	94	0	934	27	19	20	32	1.97
531219--531268	24	2.1	24	85	7	66	60	14	2	24	1.45
533528--533579	20	2.6	19	81	6	59	71	0	13	15	1.15
533741--533777	16	2.2	18	85	9	51	78	0	8	13	0.96
538183--538232	24	2.1	24	85	7	66	60	14	2	24	1.45
539204--539312	3	36.3	3	75	10	89	38	2	0	57	1.19
539216--539279	26	2.5	26	84	5	76	39	1	1	57	1.17
539204--539284	29	3.0	26	77	11	92	38	1	1	59	1.13
539214--539320	29	3.9	28	80	12	116	41	2	0	55	1.21
540687--540729	12	3.7	12	82	14	54	25	0	4	69	1.07
540725--540761	3	13.0	3	88	11	60	32	0	0	67	0.91
540729--540761	14	2.4	14	94	0	57	33	0	0	66	0.92
540713--540761	11	4.6	11	82	14	59	30	0	0	69	0.89
541870--542210	172	2.0	168	96	3	630	28	20	19	31	1.97
549218--549279	29	2.2	29	91	2	99	35	25	8	30	1.85
552043--552097	23	2.4	23	87	0	74	20	45	18	16	1.86
552120--552303	29	6.4	28	79	4	136	28	6	23	41	1.79
552120--552302	59	3.2	57	76	3	168	28	6	22	41	1.79
552124--552286	88	1.9	88	87	5	240	28	6	22	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553161--553491	42	7.8	41	88	5	457	18	24	24	32	1.97
553161--553491	84	3.9	84	93	2	531	18	24	24	32	1.97
553813--553843	16	1.9	16	93	0	53	32	6	3	58	1.40
559580--559614	18	1.9	18	100	0	70	17	51	17	14	1.77
559573--559639	31	2.2	31	88	0	98	20	47	17	13	1.81
559647--559781	29	4.7	29	77	5	130	26	6	24	42	1.79
560645--560936	42	7.0	42	89	3	437	18	25	24	31	1.98
574725--574845	38	3.3	37	71	13	117	22	15	22	39	1.91
574725--574841	37	3.2	37	70	12	107	23	16	21	39	1.92
578908--578963	22	2.7	20	81	10	67	23	28	23	25	1.99
578985--579090	32	3.3	32	87	7	153	34	22	16	25	1.95
579536--579570	16	2.2	16	94	0	61	42	11	11	34	1.77
583114--583240	32	4.0	31	78	12	125	33	22	17	26	1.96
583119--583239	63	1.9	63	83	6	156	33	20	18	27	1.96
586215--586330	36	3.3	37	73	15	118	24	16	25	34	1.95
586198--586382	69	2.7	68	83	8	200	26	14	23	35	1.93
594116--594159	21	2.0	22	82	4	54	45	2	6	45	1.42
594440--594509	13	5.2	13	75	16	54	64	2	0	32	1.08
594441--594507	21	3.2	20	83	10	66	67	2	0	29	1.06
594448--594507	21	2.9	21	87	9	79	68	1	0	30	0.99
595776--595828	21	2.6	21	78	3	63	56	0	0	43	0.99
596141--596808	339	2.0	339	87	2	966	28	19	15	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596141--596808	113	5.9	114	87	2	861	28	19	15	37	1.92
597215--597269	22	2.5	22	84	0	74	38	12	14	34	1.84
599574--599796	114	2.0	114	92	0	374	30	21	15	33	1.94
601941--601993	18	3.0	18	86	8	65	0	11	3	84	0.73
601937--601990	27	2.0	27	88	0	81	0	11	3	85	0.73
605471--605524	14	3.8	14	85	2	63	53	7	14	24	1.66
607658--607701	21	2.0	22	82	4	54	45	0	6	47	1.29
607988--608021	16	2.1	17	94	5	61	70	0	0	29	0.87
609969--609994	12	2.2	12	100	0	52	38	0	23	38	1.55
614661--615063	200	2.0	201	98	1	774	29	24	22	23	1.99
640943--641001	31	1.9	31	82	6	75	32	3	22	42	1.70
641491--641595	29	3.5	30	76	7	88	41	1	7	48	1.42
641526--641595	30	2.3	30	85	2	86	41	2	11	44	1.55
641800--641890	29	3.2	29	82	1	103	45	10	6	37	1.66
641842--641903	29	2.1	29	82	5	72	46	6	6	40	1.55
645424--645457	18	1.9	18	88	5	52	41	14	0	44	1.45
645553--645645	30	3.1	29	76	11	73	43	1	8	47	1.41
645589--645645	30	1.9	30	85	0	78	40	1	12	45	1.52
645856--645929	29	2.6	29	86	0	94	43	6	9	40	1.64
645881--645942	29	2.1	29	82	5	72	46	4	8	40	1.55
650893--651035	74	1.9	74	92	0	241	39	18	16	25	1.91
652328--652377	21	2.4	21	89	0	73	22	30	32	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657000--657167	59	2.8	60	86	2	223	30	18	16	34	1.93
659812--659869	27	2.1	27	81	12	66	55	10	12	22	1.66
665560--665629	20	3.5	20	69	7	61	30	18	17	34	1.94
669689--669728	17	2.3	18	95	4	73	12	5	10	72	1.26
669688--669729	18	2.3	19	88	12	70	11	4	9	73	1.22
669607--669849	105	2.3	106	86	7	332	37	5	7	49	1.55
669794--669833	17	2.3	18	86	4	55	15	5	7	72	1.24
669968--670007	16	2.4	17	83	8	55	47	2	25	25	1.64
672846--672888	21	2.0	21	86	0	59	51	0	4	44	1.22
672867--673083	36	6.1	36	78	13	229	47	3	5	43	1.44
672874--673083	37	5.9	37	75	19	207	46	3	5	44	1.45
672874--673147	30	8.2	31	73	16	133	45	4	5	44	1.46
673187--673223	18	2.1	18	90	5	58	21	2	0	75	0.92
673607--673649	12	3.7	12	82	14	54	23	48	16	11	1.78
673674--673740	30	2.4	26	74	25	73	53	0	0	46	1.00
673758--673791	12	2.8	12	95	0	59	29	52	8	8	1.62
674079--674118	21	1.9	20	85	10	53	60	27	7	5	1.45
676309--676382	37	2.0	37	92	5	123	43	21	5	29	1.75
680832--680931	34	2.9	34	79	10	112	45	18	5	32	1.71
687740--687796	24	2.4	24	87	0	78	59	21	1	17	1.46
689741--689918	31	5.4	31	68	19	126	25	12	12	49	1.76
689723--690049	68	5.0	68	78	11	389	28	11	12	48	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689728--689899	37	5.0	34	66	21	101	27	13	12	46	1.79
689858--690035	58	3.0	57	78	12	223	28	11	12	47	1.76
690403--690477	29	2.5	30	78	8	82	40	5	5	49	1.48
690533--690614	29	2.7	30	84	5	112	45	8	1	45	1.42
690820--690890	31	2.4	30	79	6	90	45	9	9	35	1.71
699616--699739	60	2.1	60	86	7	173	36	4	11	48	1.58
701061--701127	20	3.3	19	76	12	71	37	20	20	20	1.95
701078--701129	21	2.5	20	84	3	68	38	21	21	19	1.94
701076--701137	20	3.0	20	76	6	63	35	19	22	22	1.96
701989--702042	24	2.2	24	93	0	90	20	18	20	40	1.91

Tables:   1   2   3   4   5   6   7   8   9   10