genome.fa.s1574.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001574.1 Hibiscus syriacus cultivar Beakdansim tig00003126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1705968

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 793 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287079--287123	18	2.5	18	88	0	72	13	15	44	26	1.83
288443--288480	20	1.9	20	88	0	58	50	21	15	13	1.78
288744--288787	22	2.0	22	95	0	79	18	15	45	20	1.85
288975--289027	20	2.7	20	93	0	88	24	18	28	28	1.98
288995--289072	41	1.9	41	86	0	111	23	16	20	39	1.92
288995--289090	41	2.3	41	80	3	104	21	19	20	37	1.94
292593--292640	18	2.7	18	93	6	80	25	33	0	41	1.55
296947--296990	18	2.4	19	88	7	72	18	13	9	59	1.60
304826--305066	120	2.0	120	91	0	392	31	12	24	30	1.93
307238--307411	90	2.0	88	93	2	294	45	5	11	37	1.64
323872--324316	227	2.0	227	100	0	890	26	19	23	31	1.98
329061--329104	23	1.9	23	81	9	54	25	2	0	72	0.96
331728--331779	14	3.7	14	76	0	50	26	25	15	32	1.95
333026--333054	2	14.5	2	100	0	58	48	0	0	51	1.00
349859--349900	21	2.0	21	86	9	59	28	21	19	30	1.97
353948--353988	19	2.2	19	87	12	59	12	7	0	80	0.90
361591--361660	22	3.3	21	70	16	63	50	2	4	42	1.37
361457--361626	89	1.9	89	91	2	279	38	10	7	44	1.66
365615--365917	115	2.6	115	83	3	340	40	22	13	23	1.90
368653--368750	42	2.4	41	84	8	119	22	21	22	33	1.97
369027--369113	8	11.0	7	75	22	59	75	0	20	3	0.94
369027--369113	17	5.5	15	71	17	61	75	0	20	3	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369049--369135	5	17.8	5	68	17	58	74	0	21	3	0.96
369049--369129	24	3.3	23	79	19	85	75	0	22	2	0.92
369042--369152	16	6.5	16	75	18	66	73	0	19	5	1.07
369105--369154	6	8.8	6	76	12	52	72	2	14	12	1.22
369908--369959	21	2.5	21	81	3	61	38	19	25	17	1.93
369945--370061	61	1.9	61	85	0	162	34	23	17	24	1.96
369948--370041	41	2.3	40	83	5	109	35	23	18	23	1.96
369948--370061	20	5.7	20	81	6	113	32	23	18	25	1.97
370615--370656	19	2.2	19	91	0	66	52	26	16	4	1.63
370666--370729	33	1.9	33	87	0	92	14	25	21	39	1.91
370707--370743	14	2.6	14	100	0	74	8	27	24	40	1.83
370674--370767	47	2.0	48	89	2	145	12	26	22	38	1.90
370735--370792	20	2.9	20	80	10	64	13	24	18	43	1.87
372358--372474	57	2.1	57	96	0	216	30	16	19	33	1.94
372903--372969	21	3.2	21	68	6	64	22	35	22	19	1.96
372876--372969	42	2.2	42	83	7	111	21	35	22	21	1.96
374311--374346	14	2.6	14	90	0	54	27	0	27	44	1.55
374453--374506	20	2.8	19	91	5	90	46	20	20	12	1.83
374454--374541	19	4.6	19	82	2	50	36	20	20	22	1.95
374515--374641	33	3.9	32	82	8	157	15	20	19	44	1.87
374550--374641	19	5.4	19	60	24	51	16	17	19	46	1.84
374508--374640	66	2.0	66	91	0	212	17	20	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376930--376954	12	2.1	12	100	0	50	0	28	0	72	0.86
377129--377182	24	2.2	24	90	0	81	38	20	16	24	1.92
378299--378372	19	4.5	16	83	16	66	13	20	18	47	1.82
378295--378362	19	3.8	19	87	12	101	13	22	17	47	1.82
378276--378390	52	2.2	52	82	0	131	19	21	20	38	1.94
378479--378515	14	2.6	14	86	0	56	48	21	0	29	1.50
380382--380435	20	2.7	20	88	0	81	37	24	24	14	1.93
380476--380590	19	6.6	19	78	17	126	13	19	20	46	1.83
380519--380574	14	3.7	14	78	17	67	10	16	23	50	1.76
380500--380590	32	2.8	33	94	3	166	13	17	20	48	1.81
380478--380590	51	2.2	50	80	12	131	14	18	20	46	1.83
380584--380629	20	2.3	20	88	0	65	15	21	26	36	1.93
381105--381149	18	2.5	18	88	0	72	13	15	44	26	1.83
382469--382506	20	1.9	20	88	0	58	50	21	15	13	1.78
383002--383072	20	3.5	20	84	7	99	26	18	28	26	1.98
384482--384507	4	6.5	4	100	0	52	23	0	0	76	0.78
384896--384964	28	2.4	29	76	9	79	31	13	1	53	1.48
385450--385482	16	2.1	16	94	0	57	39	0	12	48	1.40
385456--385500	20	2.2	20	92	0	72	40	0	11	48	1.39
388234--388311	40	2.0	40	94	0	138	37	21	12	28	1.90
391082--391135	25	2.2	25	89	0	81	5	33	37	24	1.79
392475--392543	2	34.5	2	100	0	138	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392814--392932	23	5.4	23	75	11	99	36	25	20	18	1.95
392814--392942	44	2.9	43	75	15	129	34	24	20	19	1.96
392814--392945	21	6.0	21	79	6	120	34	25	21	18	1.96
393038--393080	16	2.9	14	77	12	50	30	13	20	34	1.92
394016--394111	42	2.3	42	98	0	183	29	16	12	41	1.85
396515--396577	23	2.9	22	80	17	85	39	26	9	23	1.86
396515--396577	21	2.9	21	82	15	83	39	26	9	23	1.86
401667--401714	13	3.7	13	88	0	78	27	20	16	35	1.94
401693--401858	85	2.0	85	88	0	251	28	22	18	30	1.97
406847--406887	17	2.4	17	100	0	82	39	12	7	41	1.70
410231--410301	29	2.4	30	85	2	90	29	18	11	40	1.85
413820--413871	25	2.1	25	96	0	95	11	25	11	51	1.71
429778--429822	22	2.0	22	86	0	63	31	26	11	31	1.91
430246--430301	22	2.5	22	97	0	103	35	14	12	37	1.84
432308--432364	29	2.0	29	92	0	96	33	14	19	33	1.91
439252--439283	15	2.1	15	94	0	55	71	0	12	15	1.14
457546--457584	17	2.3	17	90	0	60	30	20	25	23	1.98
458974--459013	20	2.0	20	90	0	62	50	5	0	45	1.23
461890--461935	19	2.5	19	82	10	51	28	4	26	41	1.74
463834--463885	21	2.5	21	81	3	61	38	19	25	17	1.93
463874--463987	20	5.7	20	83	6	113	31	25	18	24	1.97
463871--463987	61	1.9	61	85	0	162	33	24	17	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464503--464569	19	3.5	19	81	2	80	50	25	14	8	1.72
464565--464748	19	10.1	19	74	13	154	13	22	19	44	1.86
464636--464723	33	2.6	33	94	1	149	12	27	21	38	1.89
464691--464748	20	2.9	20	80	10	64	13	24	18	43	1.87
466445--466503	20	3.0	20	87	0	73	42	22	18	16	1.89
468182--468579	2	207.5	2	68	27	192	41	1	6	50	1.37
468214--468600	5	76.2	5	68	20	157	40	1	6	51	1.36
468182--468589	12	36.3	11	70	21	212	41	1	6	50	1.37
468200--468580	7	52.9	7	72	17	221	40	1	6	51	1.36
468290--468580	44	6.6	45	76	19	226	40	1	6	51	1.34
468207--468559	158	2.2	163	80	10	379	40	0	7	51	1.35
471555--471654	31	3.2	31	95	2	175	46	18	17	19	1.85
472895--472932	18	2.1	18	100	0	76	44	5	28	21	1.73
476600--477015	198	2.1	196	92	0	697	32	24	18	24	1.97
477150--477378	83	2.7	83	84	1	278	34	23	19	23	1.97
477380--477865	83	5.8	83	85	2	591	35	20	17	26	1.95
477379--477876	167	3.0	166	82	3	617	34	21	16	26	1.95
479242--479376	6	21.8	6	66	19	55	20	3	1	74	1.06
479511--479746	4	57.5	4	69	17	60	18	6	2	72	1.17
479548--479626	40	2.0	41	82	2	97	13	7	2	75	1.11
479511--479640	53	2.4	56	79	13	139	17	6	3	73	1.17
479651--479687	6	6.3	6	90	6	58	16	2	0	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479651--479687	17	2.1	18	90	5	58	16	2	0	81	0.81
479651--479759	37	2.7	40	80	16	111	18	7	0	74	1.04
480087--480159	37	1.9	37	88	2	110	46	12	6	34	1.68
480548--480590	2	21.5	2	100	0	86	51	0	0	48	1.00
480906--480947	2	21.5	2	95	4	77	52	0	0	47	1.00
494893--495306	139	3.0	140	92	0	677	31	16	15	35	1.91
494893--495311	140	3.0	140	92	0	687	31	16	15	35	1.91
495835--500059	261	16.7	261	77	8	3355	27	15	16	40	1.89
495831--499858	750	5.3	752	74	11	2868	27	15	16	40	1.89
505598--505901	156	1.9	157	83	3	389	23	14	17	45	1.85

Tables:   1   2   3   4   5   6   7