genome.fa.s1574.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001574.1 Hibiscus syriacus cultivar Beakdansim tig00003126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1705968

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 793 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728843--728880	2	20.0	2	89	10	62	52	0	0	47	1.00
729099--729153	22	2.5	22	78	0	65	61	3	0	34	1.13
730732--730761	14	2.1	14	93	0	51	76	16	6	0	0.99
737657--737711	15	3.7	15	85	7	69	23	3	3	69	1.21
738047--738779	139	5.3	138	86	3	972	30	12	13	42	1.82
744476--744523	19	2.5	19	86	0	69	20	35	14	29	1.93
750880--750910	16	1.9	16	93	0	53	22	16	29	32	1.95
751953--751991	20	1.9	21	84	5	53	56	2	0	41	1.13
753532--753584	17	3.1	17	84	13	56	15	11	0	73	1.09
757797--757924	46	2.7	47	83	8	134	27	10	26	35	1.90
767513--767632	42	2.9	39	75	17	109	76	0	13	9	1.06
767511--767638	8	15.3	9	74	16	75	77	0	12	9	1.04
768812--768921	37	3.0	37	86	2	141	40	17	20	21	1.92
768923--769467	55	9.9	55	92	2	848	28	15	24	32	1.95
773969--774006	19	2.0	20	90	10	62	5	21	15	57	1.57
812264--812392	57	2.2	57	77	16	133	62	9	3	24	1.39
824222--824259	13	2.9	13	92	7	60	0	15	0	84	0.63
826727--826776	26	1.9	26	84	8	66	64	10	10	16	1.50
827014--827064	24	2.1	24	88	0	75	21	25	31	21	1.98
828429--828462	2	17.0	2	100	0	68	50	0	0	50	1.00
828498--828538	21	1.9	22	85	5	57	56	0	4	39	1.21
839241--839280	21	1.9	21	85	10	55	55	0	5	40	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840390--840445	21	2.7	21	97	0	103	25	23	23	28	1.99
842720--842766	13	3.6	13	97	0	85	42	6	14	36	1.72
842720--842773	13	4.1	13	95	2	81	40	7	14	37	1.74
843221--843292	23	3.3	22	79	9	76	22	18	33	26	1.96
848919--849079	66	2.4	66	92	0	268	29	19	16	34	1.94
854419--854460	17	2.4	18	88	4	59	52	11	0	35	1.38
855702--855770	29	2.3	29	83	11	79	40	8	13	37	1.75
860314--860392	15	5.3	15	76	0	77	34	2	21	41	1.67
867759--867829	30	2.4	30	95	0	124	23	25	14	36	1.92
882081--882150	15	4.7	15	76	0	68	30	4	22	42	1.73
885107--885479	66	5.6	65	79	9	335	28	17	14	39	1.89
885143--885247	36	3.1	36	70	22	84	28	15	15	40	1.87
885151--885324	30	5.4	30	64	16	89	27	15	14	43	1.85
885312--885424	37	3.2	36	67	23	96	25	23	15	35	1.94
885107--885428	66	4.8	66	84	4	371	27	17	14	39	1.89
885455--885524	36	1.9	36	85	5	97	37	17	10	35	1.83
886696--886748	20	2.7	20	72	27	58	35	16	30	16	1.92
886783--886843	22	3.0	20	79	11	61	29	14	27	27	1.95
886791--886843	22	2.5	21	79	8	63	26	13	32	28	1.93
887256--887676	46	9.2	46	89	1	628	41	11	23	23	1.86
887258--887474	20	9.6	20	65	26	80	41	12	25	21	1.88
887581--887659	20	3.7	20	72	18	68	39	13	26	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
889546--889570	11	2.3	11	100	0	50	16	0	24	60	1.36
890026--890081	25	2.3	25	82	11	64	33	3	7	55	1.45
890980--891030	19	2.5	20	81	6	59	45	9	5	39	1.62
892369--892480	5	21.4	5	66	21	52	7	19	0	72	1.13
892358--892434	25	2.9	27	78	5	68	6	20	1	71	1.16
892369--892434	25	2.5	28	82	7	84	7	22	1	68	1.24
893149--893190	14	2.9	14	83	13	50	7	16	2	73	1.15
905280--905757	226	2.1	226	91	0	776	37	14	15	32	1.88
905893--905931	2	19.5	2	89	0	51	2	5	46	46	1.38
908699--908736	19	2.0	19	89	0	58	28	13	10	47	1.76
910112--910160	6	8.2	6	88	0	62	51	6	10	32	1.61
910120--910166	24	2.0	24	86	0	67	53	10	6	29	1.60
913235--914020	197	4.1	199	85	5	956	31	14	13	40	1.85
913662--914214	180	3.1	178	81	5	623	30	13	13	42	1.84
916931--916981	20	2.7	19	85	8	68	39	19	5	35	1.76
919112--919160	24	2.0	24	88	4	71	42	6	0	51	1.27
923061--923097	16	2.3	16	90	9	58	45	10	5	37	1.62
923759--923799	21	2.0	21	90	9	66	26	17	17	39	1.91
925844--925913	31	2.3	31	87	5	97	41	14	8	35	1.76
926288--926317	14	2.1	14	100	0	60	46	0	0	53	1.00
932381--932417	18	2.1	18	100	0	74	37	0	18	43	1.51
932465--932534	2	35.5	2	97	2	133	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937784--937904	35	3.4	35	81	4	170	24	19	19	37	1.94
937764--937904	72	2.0	72	95	0	255	24	18	19	36	1.94
943594--943674	42	1.9	42	87	0	117	20	16	27	35	1.94
945229--945368	64	2.2	64	85	2	192	24	18	29	27	1.98
945808--945910	19	4.9	19	78	18	98	46	0	27	26	1.53
945807--945860	27	1.9	27	88	7	81	46	0	24	29	1.53
946119--946229	2	56.5	2	77	13	106	50	0	2	45	1.22
946677--946743	21	3.5	21	64	26	58	53	23	0	22	1.46
946659--946830	87	2.0	87	95	0	308	53	22	1	22	1.53
946778--946830	14	3.8	14	78	9	54	58	16	0	24	1.38
946768--946851	21	4.3	21	67	20	56	54	23	0	21	1.44
946765--946844	35	2.3	35	85	8	101	57	21	0	21	1.41
946938--947030	20	4.7	19	71	10	71	44	8	4	43	1.54
946905--947042	57	2.4	57	81	9	174	42	8	7	42	1.63
946949--946989	15	2.6	16	88	7	57	46	9	2	41	1.50
946938--947012	35	2.0	39	82	10	95	44	9	4	42	1.55
946969--947027	22	2.7	22	78	17	68	42	8	5	44	1.57
947036--947127	21	4.3	20	69	16	60	36	6	7	48	1.57
947052--947154	22	4.8	21	75	11	75	35	5	8	49	1.58
947190--947250	14	4.3	14	74	12	52	44	6	3	45	1.46
947143--947350	65	3.2	64	79	13	219	43	5	2	48	1.40
947166--947278	43	2.8	40	81	14	128	44	6	3	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
947197--947258	14	4.4	14	74	11	54	46	8	1	43	1.42
947101--947350	131	1.9	132	82	7	321	42	5	3	48	1.43
947137--947321	31	5.8	30	73	20	144	41	4	3	49	1.42
947336--947456	6	21.3	6	72	22	77	47	0	0	50	1.12
947307--947436	37	3.6	36	72	22	96	48	1	0	49	1.16
947354--947482	28	4.5	28	79	15	99	48	2	0	48	1.14
947475--947676	100	2.0	101	86	2	282	30	21	6	41	1.79
950178--950224	14	3.7	14	71	26	50	51	4	0	44	1.21
950176--950225	23	2.1	24	96	3	93	48	4	0	48	1.20
950229--950304	22	3.0	24	83	12	75	39	3	1	55	1.27
950280--950347	30	2.3	29	78	9	75	44	1	2	51	1.25
950463--950498	16	2.2	16	95	0	63	38	19	13	27	1.90
950494--950607	16	7.2	16	86	1	158	41	13	23	21	1.88
952316--952365	23	2.1	24	92	3	84	46	4	2	48	1.32
952369--952444	22	3.0	24	83	12	75	39	3	1	55	1.27
952420--952487	30	2.3	29	78	9	75	44	1	2	51	1.25
952603--952638	16	2.2	16	95	0	63	38	19	13	27	1.90
952634--952746	16	7.2	16	86	3	158	40	14	23	21	1.90
952634--952746	47	2.4	48	89	2	167	40	14	23	21	1.90
954904--955243	45	7.6	45	91	0	527	29	20	8	41	1.82
955280--955515	81	2.9	80	92	2	382	29	21	11	37	1.89
955571--955622	26	2.0	26	100	0	104	26	23	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
955504--955688	93	2.0	92	89	3	282	28	24	17	29	1.97
955597--955811	67	3.2	67	93	1	369	27	24	17	30	1.97
955985--956174	57	3.4	56	84	5	224	36	15	8	38	1.79
956019--956183	57	2.9	57	85	4	235	36	17	9	35	1.83
959655--960092	45	9.7	45	87	0	606	30	20	8	41	1.81
961095--961271	90	2.0	90	92	1	293	44	6	11	37	1.65
962014--962053	2	19.5	2	94	5	71	47	0	2	50	1.14
968499--968733	81	3.0	80	89	3	359	30	22	12	34	1.91
968694--969070	67	5.6	67	89	0	567	27	24	15	32	1.95
968694--969070	133	2.8	134	89	2	562	27	24	15	32	1.95

Tables:   1   2   3   4   5   6   7