genome.fa.s1574.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001574.1 Hibiscus syriacus cultivar Beakdansim tig00003126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1705968

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 793 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505742--509026	259	12.8	260	83	4	3728	25	14	16	42	1.87
505742--509028	778	4.3	777	85	5	4151	25	14	16	42	1.87
508024--508459	237	1.8	236	81	4	547	23	12	17	46	1.82
508319--509026	249	2.8	252	80	5	725	26	15	16	42	1.87
510143--510203	24	2.5	24	97	2	113	31	16	11	40	1.84
514002--514037	13	2.6	14	86	4	56	47	25	2	25	1.65
520308--520545	131	1.8	131	90	0	386	40	16	10	32	1.82
521035--521069	18	1.9	18	88	0	52	37	5	8	48	1.58
521773--521840	17	4.1	16	71	17	57	4	13	4	77	1.06
522339--522409	3	24.7	3	91	8	121	70	29	0	0	0.88
522408--522457	3	16.7	3	100	0	100	68	0	0	32	0.90
522932--523025	42	2.3	41	78	10	102	36	19	15	28	1.93
523439--523528	41	2.2	41	80	7	103	34	17	16	31	1.93
522760--523511	254	3.0	249	81	7	871	32	15	16	34	1.91
528234--528291	12	4.4	14	79	18	70	77	0	17	5	0.94
528229--528383	24	6.8	23	76	15	130	77	1	17	3	0.99
528244--528387	6	23.2	6	70	22	61	78	0	18	2	0.91
528259--528392	19	6.9	18	74	16	99	79	0	17	2	0.91
528244--528392	9	15.2	9	75	13	118	78	0	17	3	0.93
528246--528392	20	7.0	21	74	17	92	78	0	17	3	0.93
528998--529059	28	2.2	28	88	0	97	37	35	6	20	1.79
530891--530951	20	3.0	20	76	11	61	21	24	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530279--531321	263	4.0	261	88	2	1477	30	16	18	34	1.94
530887--530999	42	2.7	40	80	9	127	25	20	23	30	1.99
532135--532163	2	14.5	2	100	0	58	51	0	0	48	1.00
538197--538232	19	1.9	18	88	5	54	55	11	11	22	1.66
539717--539747	14	2.1	15	94	5	55	45	3	6	45	1.45
542193--542234	21	2.0	20	90	4	66	78	4	4	11	1.06
542862--542935	21	3.5	21	77	0	76	40	10	24	24	1.87
543088--543132	17	2.6	18	82	10	58	46	0	0	53	1.00
550640--550672	15	2.2	15	94	0	57	30	15	9	45	1.77
551618--551720	40	2.5	41	81	6	111	32	17	24	26	1.97
553202--553258	30	1.9	29	82	10	71	31	12	7	49	1.67
553339--553389	24	2.2	23	85	3	66	35	0	7	56	1.28
553840--553885	20	2.2	21	92	3	76	45	15	10	28	1.79
554075--554625	123	4.5	120	79	4	444	34	17	14	33	1.91
554076--554625	243	2.2	248	79	5	564	34	17	14	33	1.91
554565--554658	43	2.2	41	81	7	116	32	11	19	36	1.88
554010--554625	123	5.0	121	79	5	391	33	17	14	33	1.91
554584--554672	43	2.1	43	91	0	142	32	14	20	32	1.93
558134--558178	2	22.5	2	100	0	90	48	0	0	51	1.00
560506--560543	12	2.8	13	88	11	51	36	0	0	63	0.95
562531--562612	27	3.0	27	64	13	69	29	15	15	39	1.89
562504--562899	54	7.3	54	88	1	578	27	17	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564123--564179	22	2.7	21	81	10	62	19	0	26	54	1.44
564342--564400	22	2.6	23	78	7	68	20	13	23	42	1.88
565660--565839	90	2.0	90	95	0	324	36	11	7	45	1.68
579319--579369	22	2.4	21	81	12	59	19	0	27	52	1.46
581471--581536	29	2.3	29	94	0	114	36	13	22	27	1.92
583853--584149	54	5.5	54	89	1	443	25	17	21	36	1.95
587951--587989	13	3.0	13	88	0	60	25	20	20	33	1.97
587924--588139	98	2.2	98	80	1	236	32	18	17	31	1.94
588058--588087	13	2.3	13	100	0	60	30	23	6	40	1.80
589202--589232	12	2.6	12	94	0	53	70	9	6	12	1.31
589722--589838	48	2.8	40	70	19	110	0	36	9	53	1.33
592680--592749	24	2.9	24	74	14	81	45	25	0	28	1.54
592680--592775	24	3.8	24	71	16	70	44	25	2	28	1.65
592682--592812	51	2.6	50	87	9	178	44	22	2	30	1.65
592682--592789	26	4.3	26	74	14	86	44	23	1	30	1.64
592796--592881	25	3.2	26	76	14	86	50	25	2	22	1.61
592874--593040	29	5.9	29	74	12	125	52	20	5	22	1.67
592905--593040	28	5.0	28	73	10	120	52	19	4	22	1.63
597600--598064	54	8.6	54	88	3	643	26	16	20	37	1.93
597600--598064	107	4.3	108	90	2	634	26	16	20	37	1.93
597608--598064	161	2.8	162	89	3	679	26	16	20	36	1.94
600866--600899	17	2.0	17	88	0	50	61	8	5	23	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605644--605685	18	2.3	18	100	0	84	23	16	4	54	1.61
609678--609874	106	1.9	106	83	2	261	34	24	18	22	1.97
611633--611709	41	1.9	39	84	5	100	18	28	5	48	1.69
611877--611934	9	6.2	9	75	20	57	17	6	0	75	1.01
611869--611939	14	5.1	14	77	14	67	16	7	1	74	1.10
612860--612901	10	4.1	10	84	3	57	16	2	0	80	0.81
612860--612901	16	2.8	15	82	10	59	16	2	0	80	0.81
612833--612900	26	2.5	26	83	4	73	10	8	2	77	1.08
616365--616424	20	2.9	21	80	14	88	78	6	13	1	1.02
617946--618055	37	3.0	36	72	7	96	26	20	11	41	1.86
618590--619238	216	3.0	216	88	1	932	34	23	18	23	1.96
618670--619238	106	5.3	106	87	2	773	34	23	18	23	1.96
618590--619184	322	1.8	324	89	2	935	35	24	18	22	1.96
620521--620560	18	2.3	18	83	8	57	25	5	2	67	1.23
620969--621045	41	1.9	39	86	5	109	16	28	6	48	1.71
621233--621273	18	2.3	18	86	0	55	14	14	2	68	1.32
622486--622570	45	1.9	44	82	2	107	36	15	28	20	1.92
623721--624310	135	4.4	136	81	4	696	30	20	16	32	1.95
632257--632332	3	25.0	3	83	2	98	31	1	0	67	0.99
633677--633725	22	2.2	22	89	7	73	26	4	2	67	1.19
633656--633725	11	6.3	10	79	17	59	27	4	1	67	1.18
633903--634113	115	1.8	115	86	2	307	38	9	7	44	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639493--639537	22	2.0	22	100	0	90	42	17	4	35	1.70
643243--643277	13	2.7	13	95	0	61	17	48	20	14	1.81
646093--646214	63	1.9	63	85	6	167	20	26	25	27	1.99
652545--652605	18	3.4	18	86	0	77	19	42	18	19	1.89
653531--653591	32	1.9	32	83	6	79	42	11	16	29	1.83
656844--656868	13	1.9	13	100	0	50	16	44	24	16	1.86
659760--659832	29	2.4	30	77	11	78	16	21	31	30	1.95
668081--668117	6	6.2	6	96	0	56	48	5	0	45	1.25
669715--669739	2	12.5	2	100	0	50	48	0	0	52	1.00
676791--676944	36	4.4	36	77	13	142	25	19	13	40	1.88
676828--677075	66	3.8	66	90	1	390	27	17	14	40	1.88
676820--677075	131	2.0	131	91	0	413	27	17	14	40	1.89
677078--677626	276	2.0	276	85	2	735	30	25	15	28	1.96
677078--677626	138	4.0	137	83	3	654	30	25	15	28	1.96
680392--680442	25	2.1	23	82	7	57	35	3	5	54	1.43
686875--686974	23	4.3	23	79	0	101	20	21	21	38	1.94
686875--686971	46	2.1	46	86	0	131	20	21	20	37	1.95
694985--695039	22	2.5	22	90	0	83	32	20	20	27	1.97
695442--695843	79	5.1	79	86	3	531	35	11	24	28	1.90
697085--697113	2	14.5	2	100	0	58	51	0	0	48	1.00
699201--699255	22	2.8	20	79	20	62	29	18	29	23	1.98
699664--700021	79	4.5	79	91	1	574	33	11	24	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703700--703799	37	2.6	40	82	4	116	37	12	18	33	1.87
703633--703832	106	1.9	106	80	6	235	35	11	19	34	1.87
703731--703978	63	3.8	66	82	6	288	36	9	16	37	1.81
708684--709150	139	3.3	140	85	3	536	45	14	11	29	1.80
710276--710415	55	2.5	55	79	2	156	28	22	15	32	1.95
710873--710950	38	2.1	38	100	0	156	12	30	12	43	1.81
711387--711563	5	35.4	5	100	0	354	59	0	0	40	0.97
719689--719756	31	2.2	31	82	10	77	58	2	22	16	1.51
725658--725702	18	2.5	18	96	0	81	33	6	15	44	1.73
727309--727355	19	2.5	19	92	0	85	25	17	6	51	1.69

Tables:   1   2   3   4   5   6   7