genome.fa.s1574.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001574.1 Hibiscus syriacus cultivar Beakdansim tig00003126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1705968

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 793 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1528853--1528894	20	2.0	20	86	4	57	40	4	23	30	1.75
1530334--1530437	33	3.1	33	82	9	95	30	36	1	30	1.69
1530535--1530567	16	2.0	17	94	5	59	24	27	0	48	1.51
1537127--1537170	12	3.6	11	82	17	52	75	4	20	0	0.98
1542350--1542451	36	2.9	36	91	1	161	31	33	4	30	1.79
1544602--1544650	24	2.0	25	88	4	73	61	14	12	12	1.58
1545943--1545997	24	2.3	25	81	6	60	32	16	21	29	1.95
1558435--1558497	19	3.6	18	80	17	62	76	4	17	1	1.04
1568649--1568699	19	2.6	20	87	3	68	43	3	15	37	1.66
1569609--1569668	30	2.0	31	86	3	86	55	8	8	28	1.59
1570110--1570157	23	2.1	23	96	0	87	43	12	18	25	1.85
1577966--1578009	8	5.2	8	82	17	54	0	25	0	75	0.81
1579670--1579729	30	2.0	31	83	3	77	55	11	8	25	1.63
1583121--1583194	34	2.2	34	97	0	139	35	10	18	35	1.86
1583804--1583885	41	2.0	41	100	0	164	34	17	21	26	1.95
1584474--1584514	15	2.7	15	100	0	82	46	39	0	14	1.45
1586829--1586871	17	2.5	17	82	17	54	79	6	13	0	0.93
1602398--1602429	13	2.5	13	94	0	55	81	0	18	0	0.70
1614259--1614283	8	3.1	8	100	0	50	0	24	0	76	0.80
1620819--1620923	36	2.9	36	92	1	176	29	36	5	28	1.80
1620822--1620906	11	7.2	11	69	22	57	30	36	4	28	1.78
1622446--1622483	19	2.0	19	85	10	51	44	0	31	23	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623260--1623310	25	2.0	25	96	0	93	31	15	17	35	1.92
1623714--1623747	17	2.0	17	88	0	50	35	5	20	38	1.77
1623728--1623772	20	2.2	21	88	4	65	42	11	13	33	1.79
1626707--1626761	24	2.3	25	81	6	60	29	21	16	32	1.95
1630592--1630631	21	1.9	21	85	10	55	22	27	5	45	1.73
1630591--1630642	21	2.6	19	75	18	52	21	28	3	46	1.69
1632564--1632612	25	2.0	25	95	0	89	28	16	18	36	1.92
1634724--1634757	13	2.5	13	95	4	59	79	8	11	0	0.94
1634739--1634776	20	1.9	20	88	0	58	78	10	10	0	0.95
1644383--1644444	17	3.6	17	78	4	61	41	9	14	33	1.79
1644400--1644443	18	2.5	18	85	10	56	45	11	9	34	1.72
1647926--1647966	6	6.5	6	83	10	55	82	0	14	2	0.76
1647927--1647959	10	3.3	10	84	16	50	81	0	15	3	0.80
1650249--1650307	17	3.5	17	68	13	50	28	15	8	47	1.74
1653772--1653810	18	2.2	18	95	0	69	43	15	5	35	1.69
1653844--1653907	17	3.8	17	78	0	65	42	15	12	29	1.84
1658439--1658491	5	11.0	5	86	9	51	0	15	3	81	0.83
1658440--1658493	20	2.9	19	81	13	67	0	14	5	79	0.90
1658450--1658486	14	2.8	14	88	8	51	0	16	2	81	0.81
1668856--1668888	13	2.5	13	100	0	66	15	15	36	33	1.88
1669754--1669910	11	13.2	11	70	23	97	28	4	35	31	1.77
1669771--1669871	25	4.3	23	65	28	68	29	3	35	30	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1669737--1669913	36	4.9	36	93	0	302	28	5	35	30	1.79
1669807--1669910	23	4.4	23	65	27	65	28	4	35	30	1.78
1670252--1670301	19	2.5	20	90	3	75	48	6	12	34	1.65
1673983--1674034	22	2.3	23	90	3	79	28	3	32	34	1.76
1674003--1674146	36	4.0	36	97	0	270	28	4	35	31	1.78
1674027--1674143	11	9.8	11	72	22	78	28	4	36	30	1.76
1673985--1674136	72	2.1	74	87	9	242	29	4	34	31	1.78
1674029--1674143	23	4.8	24	71	24	82	27	4	37	30	1.76
1674485--1674535	19	2.6	20	87	3	68	45	5	15	33	1.71
1677719--1677875	11	13.2	11	71	23	106	28	3	36	31	1.73
1677702--1677875	23	7.3	24	71	22	102	28	3	36	31	1.74
1677702--1677877	36	4.9	36	96	0	318	28	3	36	31	1.74
1681728--1681779	22	2.3	23	93	3	88	28	3	34	32	1.76
1681748--1681891	36	4.0	36	97	0	270	28	4	36	31	1.76
1681745--1681888	11	12.2	11	72	23	107	28	3	36	31	1.74
1681747--1681888	23	5.9	24	73	23	113	28	3	35	31	1.74
1686782--1686861	35	2.2	37	86	4	110	31	37	3	27	1.74
1687299--1687346	14	3.1	15	76	11	53	72	6	18	2	1.15
1687689--1687752	29	2.2	29	94	0	110	42	17	31	9	1.81
1691459--1691511	22	2.4	22	93	6	90	39	30	20	9	1.84
1692422--1692474	23	2.2	24	90	3	81	60	13	16	9	1.58
1692431--1692481	24	2.2	23	89	3	75	58	13	19	7	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1693722--1693776	24	2.3	25	81	6	60	32	16	21	29	1.95
1696284--1696335	24	2.3	23	90	6	79	59	13	17	9	1.60
1696292--1696342	24	2.2	23	89	3	75	58	13	19	7	1.59
1697583--1697637	24	2.3	25	81	6	60	32	16	21	29	1.95
1700144--1700195	22	2.3	23	86	6	70	59	13	17	9	1.60
1700153--1700202	24	2.2	22	85	7	64	58	14	20	8	1.61
1701436--1701490	24	2.3	25	81	6	60	32	16	21	29	1.95

Tables:   1   2   3   4   5   6   7

The End!