genome.fa.s1711.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001711.1 Hibiscus syriacus cultivar Beakdansim tig00003454_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4148933

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1546 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2588945--2588974	14	2.1	14	100	0	60	43	20	13	23	1.86
2592824--2592873	22	2.3	22	85	0	64	32	10	18	40	1.83
2596205--2596255	18	2.8	18	84	0	75	27	31	19	21	1.97
2596509--2596534	2	13.0	2	100	0	52	50	0	0	50	1.00
2596796--2596849	20	2.7	20	97	0	99	29	24	16	29	1.97
2603173--2603216	18	2.4	18	100	0	88	25	31	29	13	1.94
2603784--2603945	63	2.5	65	81	6	163	25	19	19	34	1.96
2606349--2606432	41	2.0	41	100	0	168	40	17	9	32	1.82
2609853--2609968	30	3.9	30	86	3	137	22	13	2	61	1.45
2609945--2610024	30	2.7	30	84	1	108	21	12	3	62	1.45
2610643--2610710	3	22.7	3	96	0	127	32	1	0	66	1.01
2611075--2611112	16	2.4	16	82	8	51	23	5	5	65	1.34
2613345--2613432	44	2.0	43	86	2	122	28	19	11	40	1.86
2617604--2617641	10	3.9	10	80	19	53	76	0	10	13	1.02
2620651--2620691	16	2.6	16	88	3	57	29	21	12	36	1.90
2624270--2624330	30	2.0	30	100	0	122	49	13	6	31	1.67
2625883--2625923	22	1.9	21	85	5	55	39	36	2	21	1.67
2627302--2627341	15	2.7	15	100	0	80	47	0	32	20	1.50
2635428--2635467	17	2.4	17	100	0	80	30	10	22	37	1.87
2636301--2636329	1	29.0	1	100	0	58	0	0	0	100	0.00
2638368--2638397	15	2.0	15	93	0	51	36	23	26	13	1.92
2639921--2639949	15	1.9	15	100	0	58	48	6	3	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2640488--2640550	3	21.0	3	87	6	92	31	1	3	63	1.19
2641435--2641486	15	3.5	15	91	0	86	5	15	69	9	1.35
2644168--2644212	21	2.2	21	84	4	56	35	24	31	8	1.86
2645123--2645164	21	2.0	22	85	4	59	23	9	2	64	1.35
2651023--2651063	22	1.9	21	85	5	55	48	2	0	48	1.14
2657519--2657569	23	2.2	23	89	0	75	23	21	17	37	1.94
2657527--2657587	23	2.7	23	86	0	77	18	24	24	32	1.97
2661132--2661185	22	2.5	22	82	5	67	50	0	1	48	1.11
2661836--2661993	21	7.8	20	72	7	86	38	25	17	18	1.92
2661960--2662189	20	11.5	20	81	5	223	36	24	18	20	1.94
2662868--2662914	24	2.0	24	87	8	69	25	14	21	38	1.92
2663086--2663110	12	2.1	12	100	0	50	72	0	28	0	0.86
2665368--2665598	33	6.7	34	77	16	187	46	18	21	13	1.83
2665382--2665598	19	12.4	19	73	22	199	46	17	21	14	1.83
2665410--2665620	51	4.0	53	94	3	349	45	17	22	14	1.84
2665627--2665742	53	2.2	53	98	1	225	13	24	18	43	1.86
2665645--2665742	19	5.4	19	84	13	143	14	22	17	45	1.84
2665836--2665893	14	4.4	13	77	10	55	50	20	0	29	1.49
2667798--2667853	14	3.7	14	80	17	67	44	23	21	10	1.83
2667780--2667870	32	2.8	32	93	1	155	46	21	20	10	1.82
2667871--2667983	19	6.5	19	73	19	111	8	16	27	46	1.77
2667871--2667962	33	2.8	33	93	3	150	8	17	28	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2668156--2668207	19	2.7	20	84	3	70	11	15	26	46	1.80
2668256--2668812	92	6.1	93	93	5	999	45	19	13	21	1.84
2670295--2670384	14	5.7	14	72	23	72	44	22	24	8	1.81
2670287--2670389	33	3.1	33	100	0	206	46	20	24	8	1.78
2670309--2670370	19	3.5	19	75	20	80	45	22	22	9	1.81
2670401--2670535	33	3.9	34	82	15	143	11	24	19	45	1.82
2670401--2670479	14	4.8	18	70	25	75	10	24	20	45	1.81
2670457--2670533	20	3.8	21	84	5	104	11	24	16	46	1.81
2670611--2670681	33	2.2	33	92	0	115	47	18	22	11	1.80
2670863--2670916	22	2.5	21	78	3	63	20	16	38	24	1.92
2671063--2671235	20	8.6	20	86	3	224	19	20	26	34	1.96
2671245--2671293	21	2.4	20	80	6	53	26	16	22	34	1.95
2671222--2671316	41	2.4	39	77	8	95	21	17	24	36	1.94
2675023--2675102	2	39.5	2	97	2	151	50	0	1	48	1.08
2679426--2681098	214	7.9	214	92	2	2704	30	20	16	32	1.95
2680189--2680268	42	1.9	42	84	5	108	28	18	26	26	1.98
2680403--2680482	42	1.9	42	81	0	97	28	22	23	25	1.99
2680608--2680687	42	1.9	42	86	0	115	26	22	26	25	2.00
2681011--2681097	42	2.1	41	82	2	102	26	21	25	26	2.00
2683574--2683670	2	48.5	2	100	0	194	50	0	0	49	1.00
2686010--2686169	21	7.6	21	92	0	239	15	21	22	40	1.90
2691535--2691741	21	10.0	21	77	13	187	21	19	25	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2691535--2691738	42	4.9	41	91	2	277	21	19	25	33	1.97
2692472--2692774	42	7.3	42	92	4	474	35	25	18	20	1.96
2692497--2692780	21	13.6	21	74	12	237	34	25	19	20	1.96
2692789--2692841	21	2.5	21	90	6	81	20	24	28	26	1.99
2694384--2694438	25	2.2	26	83	9	69	45	3	3	47	1.38
2706640--2706689	25	2.0	25	96	0	91	46	12	18	24	1.82
2707345--2707424	27	2.9	28	92	3	135	20	21	25	33	1.97
2707676--2707727	20	2.6	20	79	11	61	46	0	11	42	1.40
2710848--2710922	25	3.0	25	96	0	132	48	12	16	24	1.79
2711587--2711667	27	2.9	28	88	3	137	19	22	25	32	1.98
2711590--2711677	28	3.2	27	81	12	108	19	23	26	30	1.98
2723680--2723706	14	1.9	14	100	0	54	44	3	0	51	1.19
2728046--2728249	65	3.2	63	76	12	200	28	18	22	31	1.97
2728697--2728739	2	21.5	2	100	0	86	51	0	0	48	1.00
2730354--2730378	13	1.9	13	100	0	50	52	8	8	32	1.60
2730799--2730880	23	3.6	22	77	8	85	24	25	26	23	2.00
2736314--2736521	65	3.2	64	75	13	194	27	18	23	30	1.97
2738512--2738546	18	2.0	18	88	5	54	57	8	0	34	1.29
2740915--2740948	13	2.5	14	90	4	52	26	0	26	47	1.53
2741640--2742050	44	9.3	43	78	12	325	47	6	19	25	1.74
2741640--2742054	87	4.7	85	80	9	349	48	6	19	25	1.73
2741818--2741918	53	1.9	53	87	4	150	48	6	21	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2741731--2742003	139	2.0	140	85	5	374	49	6	19	24	1.73
2741934--2742077	44	3.3	44	75	13	136	54	5	14	25	1.61
2743046--2743098	21	2.4	23	77	20	60	11	11	7	69	1.35
2748578--2748602	13	1.9	13	100	0	50	24	8	16	52	1.70
2749042--2749302	129	2.0	129	94	0	459	32	15	15	36	1.90
2749407--2749436	2	15.0	2	100	0	60	50	0	0	50	1.00
2750681--2750738	24	2.4	24	100	0	116	60	10	6	22	1.53
2755926--2756065	71	2.0	71	88	5	212	35	17	12	35	1.87
2756203--2756271	31	2.2	32	80	10	81	47	20	1	30	1.59
2760356--2760398	22	2.0	22	100	0	86	37	18	9	34	1.83
2761839--2761872	13	2.8	12	86	8	50	26	20	0	52	1.46
2767904--2767936	16	2.1	16	94	0	57	33	33	3	30	1.73
2768700--2768746	18	2.6	18	96	0	85	34	27	25	12	1.92
2774092--2774236	76	1.9	76	81	5	177	27	22	13	36	1.91
2775862--2775990	59	2.2	59	85	0	168	28	23	18	29	1.98
2778833--2779011	29	6.3	29	78	7	161	30	6	21	41	1.78
2778834--2778973	55	2.5	56	80	4	156	30	7	21	41	1.80
2778837--2778991	84	1.8	84	87	5	233	29	6	21	42	1.78
2786100--2786162	18	3.6	18	93	4	110	17	46	22	14	1.84
2787303--2787340	20	1.9	20	84	10	51	50	10	5	34	1.59
2786874--2793238	960	6.7	959	88	2	9098	36	18	16	28	1.93
2796750--2798830	951	2.2	956	90	1	3275	37	18	16	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2804102--2815967	952	12.5	950	91	2	18538	36	18	16	28	1.92
2815965--2818324	957	2.5	957	94	1	4082	36	17	16	28	1.92
2818331--2828241	959	10.2	960	82	7	11614	36	18	16	28	1.92
2824824--2825131	154	2.0	154	100	0	616	35	14	19	31	1.92
2824978--2828249	960	3.4	929	87	6	4513	36	18	16	29	1.92
2825472--2829160	960	4.0	912	87	5	4832	37	17	15	29	1.92
2829574--2835480	961	6.2	960	94	1	9577	36	18	16	28	1.92
2837264--2837329	32	2.1	32	97	0	123	34	19	0	45	1.51
2839146--2839202	31	1.9	30	89	7	89	31	8	15	43	1.78
2842641--2842685	2	22.5	2	100	0	90	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13