genome.fa.s2126.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002126.1 Hibiscus syriacus cultivar Beakdansim tig00004355_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1482737

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 903 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1355826--1355875	20	2.5	20	87	12	68	36	10	28	26	1.88
1355914--1355970	22	2.7	21	82	12	64	33	14	22	29	1.93
1356342--1356668	108	3.0	107	86	4	404	34	22	16	27	1.95
1356343--1356661	162	1.9	163	84	8	421	34	21	15	27	1.94
1356387--1356668	54	5.2	54	88	1	377	34	22	16	26	1.95
1356310--1356686	162	2.3	162	79	11	406	34	21	16	27	1.95
1356967--1357036	21	3.1	21	67	21	52	48	11	20	20	1.79
1356967--1357056	46	2.0	46	93	2	155	45	11	21	22	1.82
1356967--1357083	45	2.6	46	85	6	132	46	11	22	19	1.82
1358807--1358915	47	2.4	46	89	6	161	32	18	9	40	1.82
1358807--1358929	47	2.9	41	82	12	126	31	19	8	39	1.83
1360281--1360316	13	2.8	13	95	0	63	36	19	0	44	1.51
1365810--1365845	12	3.1	12	88	8	56	30	22	16	30	1.96
1367293--1367356	23	2.8	23	78	4	76	34	25	23	17	1.96
1367594--1367648	21	2.7	21	94	2	94	21	21	18	38	1.94
1367790--1367872	41	2.0	41	82	13	100	39	16	6	37	1.74
1372379--1372434	2	28.0	2	100	0	112	50	0	0	50	1.00
1375646--1376091	54	8.3	53	85	4	518	33	21	17	27	1.96
1376371--1376533	46	3.6	46	85	5	233	44	12	22	19	1.85
1377923--1377979	3	18.7	3	96	3	105	68	0	0	31	0.90
1389214--1389259	18	2.6	18	86	6	58	60	2	6	30	1.34
1389809--1389881	15	4.9	15	76	3	85	41	6	20	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1389809--1389881	30	2.5	30	90	2	121	41	6	20	31	1.79
1389883--1389923	14	2.9	14	88	0	55	29	14	19	36	1.92
1390186--1390223	11	3.5	11	82	10	51	52	0	0	47	1.00
1390186--1390238	20	2.7	20	75	16	56	50	1	0	47	1.12
1390195--1390253	28	2.2	28	80	14	72	45	1	0	52	1.10
1390283--1390359	14	5.0	16	72	21	58	51	0	1	46	1.09
1390311--1390359	14	3.3	15	81	13	66	59	0	0	40	0.98
1390283--1390359	29	2.5	32	81	14	90	51	0	1	46	1.09
1390315--1390358	10	4.5	10	81	13	56	59	0	0	40	0.98
1390558--1390718	42	3.8	42	93	0	277	45	18	19	16	1.85
1400656--1400714	21	2.7	22	81	5	75	23	30	25	20	1.98
1402602--1402667	16	4.1	16	75	14	64	22	1	24	51	1.57
1402911--1402991	25	3.6	25	65	25	70	34	0	38	27	1.57
1402932--1403000	21	3.3	21	68	22	63	36	0	39	24	1.56
1402919--1403000	42	2.0	42	97	0	155	35	0	36	28	1.58
1402925--1402990	21	3.4	17	68	28	51	33	0	37	28	1.58
1407844--1407892	20	2.5	20	86	0	62	36	12	20	30	1.89
1412630--1412667	20	1.9	20	88	0	58	50	15	23	10	1.75
1414011--1414075	34	1.9	34	84	6	87	30	15	27	26	1.96
1421698--1421731	12	2.8	12	86	0	50	17	41	23	17	1.90
1425264--1425294	16	2.0	15	93	6	53	32	3	0	64	1.09
1425294--1425359	17	4.0	16	75	11	62	40	4	12	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436731--1436776	21	2.2	21	84	0	56	4	28	0	67	1.10
1439445--1439492	13	3.5	14	83	11	55	37	4	27	31	1.76
1439581--1439632	18	2.9	18	94	0	77	19	21	30	28	1.97
1441752--1441788	2	18.5	2	100	0	74	48	0	0	51	1.00
1442327--1442378	18	2.9	18	80	8	61	1	26	23	48	1.62
1455003--1455055	20	2.7	20	90	0	79	20	28	22	28	1.99
1456221--1456268	19	2.5	20	86	3	71	54	6	10	29	1.59
1458994--1459041	19	2.5	20	82	3	62	52	6	12	29	1.63
1460444--1460517	20	3.7	20	89	7	114	20	25	22	31	1.98
1465788--1465827	19	2.1	19	85	0	53	20	32	0	47	1.50
1467745--1467825	28	2.9	28	84	0	108	35	24	20	18	1.95
1470161--1470221	23	2.7	23	86	0	77	29	24	22	22	1.99
1470261--1470682	103	4.1	103	97	0	785	36	23	13	26	1.92
1476181--1476264	23	3.6	23	69	3	78	25	25	26	23	2.00
1476284--1476704	103	4.1	103	96	0	754	37	23	12	26	1.91
1482088--1482209	23	5.3	23	77	8	124	31	23	19	24	1.98
1482091--1482209	44	2.6	45	88	5	170	31	23	20	24	1.98
1482088--1482209	46	2.7	46	86	7	169	31	23	19	24	1.98
1482216--1482525	96	3.1	100	86	8	445	36	23	12	27	1.91

Tables:   1   2   3   4   5   6   7   8

The End!