genome.fa.s2881.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002881.1 Hibiscus syriacus cultivar Beakdansim tig00005939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1746118

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 968 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
631822--631878	27	2.1	27	100	0	114	45	7	3	43	1.48
636855--636898	21	2.1	21	83	8	54	34	9	4	52	1.54
637962--637991	2	15.0	2	100	0	60	50	0	0	50	1.00
638815--638839	13	1.9	13	100	0	50	48	0	8	44	1.32
642392--642435	3	14.7	3	95	0	70	4	34	27	34	1.77
644493--644533	18	2.3	18	91	4	66	65	0	4	29	1.13
644575--644605	10	3.1	10	95	0	53	35	0	32	32	1.58
648411--648472	24	2.7	22	79	13	63	35	3	3	58	1.31
649823--650194	192	1.9	192	80	4	437	29	11	21	38	1.88
650270--650308	21	1.9	20	84	5	51	20	12	12	53	1.71
650862--650919	29	2.0	29	100	0	116	41	17	17	24	1.90
654457--654509	21	2.5	21	81	0	61	20	24	18	35	1.95
654499--654585	20	4.3	20	79	5	104	36	20	20	21	1.95
654499--654585	41	2.2	40	89	2	129	36	20	20	21	1.95
654514--654595	20	4.1	20	78	10	78	35	19	21	23	1.96
654491--654626	61	2.2	60	75	15	136	35	20	17	26	1.95
655447--655500	24	2.2	24	93	0	90	24	18	16	40	1.90
657929--658017	20	4.4	20	82	2	117	35	23	21	19	1.95
657929--658017	40	2.2	40	90	4	144	35	23	21	19	1.95
658000--658084	33	2.5	33	90	1	125	43	17	23	15	1.87
658090--658158	33	2.1	34	86	2	95	14	24	20	40	1.90
658265--658301	14	2.6	14	86	0	56	48	21	0	29	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
659603--659684	42	2.0	42	82	4	103	20	17	40	21	1.91
660175--660276	20	5.4	20	76	13	92	39	23	21	15	1.92
660321--660464	20	7.5	20	83	9	192	21	19	19	39	1.93
662339--662406	20	3.4	20	83	0	73	45	25	13	16	1.83
662452--662498	20	2.3	20	88	0	67	21	19	23	36	1.95
663090--663221	20	6.6	20	84	1	174	22	21	18	37	1.95
663088--663221	40	3.3	40	89	1	196	23	20	18	37	1.94
663088--663221	61	2.2	61	89	1	207	23	20	18	37	1.94
663211--663263	21	2.5	21	78	0	61	33	16	26	22	1.96
665760--665791	16	2.1	16	94	5	57	37	0	56	6	1.25
666879--667091	43	4.9	43	83	4	257	26	20	23	30	1.98
666955--667133	88	2.0	89	84	2	236	25	19	21	32	1.97
667302--667360	21	2.8	21	84	0	73	55	20	5	18	1.61
670431--670481	18	2.8	18	100	0	102	39	5	25	29	1.79
670911--671293	41	9.3	41	85	2	403	32	20	18	28	1.96
672576--673585	450	2.2	453	96	1	1850	31	12	17	38	1.88
674047--674089	22	1.9	22	95	4	77	65	0	9	25	1.22
674047--674088	10	3.6	12	84	15	61	66	0	9	23	1.21
675467--675513	16	2.9	15	82	17	51	68	0	2	29	1.02
675472--675545	19	3.8	19	77	19	73	66	1	1	31	1.09
675456--675516	10	6.4	10	79	9	58	68	0	1	29	0.99
675457--675535	17	4.6	17	76	14	74	67	1	1	30	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675480--675525	13	3.4	14	76	11	51	65	0	0	34	0.93
675533--675912	37	10.5	36	79	10	267	42	8	4	44	1.55
675533--675849	73	4.4	74	81	9	293	42	8	4	44	1.55
677194--677266	38	1.9	37	86	2	101	28	5	10	54	1.57
683702--683756	28	2.0	28	100	0	110	43	3	34	18	1.67
684386--684466	29	2.9	28	75	3	99	41	33	2	22	1.67
684911--684957	16	3.0	15	81	9	58	55	19	6	19	1.64
685558--685614	13	4.4	13	72	16	55	45	10	17	26	1.81
685567--685616	26	1.9	26	84	8	66	48	10	16	26	1.77
685953--686160	65	3.2	63	79	11	208	30	22	18	27	1.97
691812--691911	30	2.8	38	68	25	90	19	16	21	44	1.87
691829--691887	30	2.0	30	96	0	109	15	16	25	42	1.88
691883--691916	15	2.3	15	94	0	59	17	11	26	44	1.83
691812--691941	69	1.9	69	85	3	181	18	16	21	43	1.87
692572--692600	15	1.9	15	100	0	58	48	20	6	24	1.74
693132--693198	24	2.8	24	90	4	100	19	10	37	32	1.86
693212--693385	88	2.0	88	95	0	312	27	11	31	29	1.92
706950--706997	15	3.3	15	80	13	55	60	4	4	31	1.35
709143--709195	23	2.3	23	90	0	88	24	26	30	18	1.98
709211--709531	103	3.1	103	96	0	606	37	24	13	25	1.91
716155--716223	23	3.0	23	77	12	79	30	26	21	21	1.99
716239--716559	103	3.1	103	93	0	561	36	23	13	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717039--717076	20	1.9	20	88	0	58	10	31	34	23	1.89
719862--719888	2	13.5	2	100	0	54	48	0	0	51	1.00
720000--720064	22	2.9	21	82	11	76	27	21	20	30	1.98
720667--720712	20	2.3	20	96	0	83	19	30	19	30	1.97
724238--724305	23	3.0	23	86	0	91	19	25	26	29	1.98
727251--727296	21	2.2	21	88	0	65	30	28	26	15	1.96
727323--727367	22	2.0	22	86	4	63	31	33	26	8	1.87
728670--728797	31	4.1	31	79	8	143	26	18	20	34	1.96
728756--728852	30	3.2	30	88	1	113	22	20	24	31	1.98
728783--728855	30	2.4	30	95	0	128	24	20	24	30	1.99
748526--748601	31	2.5	31	93	2	127	46	9	13	31	1.74
748517--748601	30	2.8	30	89	1	125	48	8	12	30	1.71
749466--749528	30	2.1	30	91	2	101	20	9	20	49	1.77
749720--749754	2	17.5	2	100	0	70	48	0	0	51	1.00
751822--751908	19	4.2	19	74	17	75	33	5	27	33	1.81
751817--751873	19	2.7	22	81	15	84	31	3	28	36	1.74
751819--751895	22	3.6	21	75	16	61	31	5	29	33	1.80
752248--752430	40	4.5	40	76	8	172	32	24	20	21	1.98
752281--752430	21	7.3	21	76	6	146	32	26	20	21	1.97
752251--752430	61	3.0	61	93	0	306	33	23	20	22	1.97
753600--753719	40	3.0	41	92	1	197	19	3	27	50	1.63
753749--753782	17	2.0	17	94	0	59	32	0	26	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755997--756037	21	2.0	21	95	0	73	51	7	12	29	1.66
760576--760645	29	2.4	29	87	2	95	30	7	44	18	1.76
762894--763055	57	2.8	57	93	0	288	51	13	4	30	1.62
762934--763024	29	3.2	29	65	14	80	49	15	5	29	1.67
763086--763142	29	2.0	28	89	3	87	59	22	5	12	1.53
771144--771202	31	1.9	31	89	0	91	38	6	11	42	1.68
771227--771326	22	4.5	22	91	0	164	49	10	0	41	1.36
771313--771352	12	3.6	12	77	16	50	52	0	2	45	1.14
771249--771343	44	2.1	44	88	1	136	49	7	1	42	1.37
772235--772280	17	2.6	18	89	3	67	32	10	30	26	1.90
772850--772947	38	2.6	37	80	12	112	39	35	10	14	1.80
775271--775327	25	2.3	25	96	0	105	42	15	7	35	1.75
781212--781248	17	2.1	19	85	10	51	48	0	0	51	1.00
781235--781717	259	1.9	258	89	2	754	36	11	9	43	1.73
793990--794067	39	2.0	40	89	2	122	44	11	16	26	1.82
803059--803088	3	10.0	3	100	0	60	66	0	0	33	0.92
804446--804526	14	5.7	14	71	18	69	53	3	4	38	1.41
804564--804605	21	2.1	19	86	13	57	66	2	2	28	1.16
812297--812336	21	1.9	21	89	0	62	25	40	25	10	1.86
815804--816560	105	7.3	106	84	6	845	24	18	24	32	1.97
815863--816560	309	2.2	311	84	5	874	23	18	24	33	1.97
817320--817369	14	3.6	14	82	12	59	0	20	2	78	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
817343--817463	61	2.0	63	83	6	158	11	21	11	55	1.67
828110--828149	15	2.7	15	96	3	73	57	0	10	32	1.32
837249--837273	13	1.9	13	100	0	50	56	0	8	36	1.29
837388--837436	9	5.4	9	83	9	64	75	2	2	20	1.00
837389--837461	32	2.2	33	85	7	96	73	4	1	20	1.06
837389--837456	4	16.0	4	79	15	59	73	4	1	20	1.08
837388--837461	19	4.2	17	79	13	80	74	4	1	20	1.06
838666--838723	4	14.0	4	77	22	50	72	1	3	22	1.09
838632--838723	12	7.4	13	74	20	56	70	1	5	22	1.14
838715--838813	36	2.7	37	84	9	130	48	4	1	46	1.27

Tables:   1   2   3   4   5   6   7   8   9