Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002881.1 Hibiscus syriacus cultivar Beakdansim tig00005939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1746118

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 968 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1740608--1740672
9
6.9
9
72
13
51
1
10
6
81
0.93
1740608--1740693
39
2.2
39
81
10
95
1
12
6
79
0.99
1741287--1741327
20
2.0
20
90
0
64
36
12
24
26
1.91
1742706--1742767
32
1.9
32
90
0
97
58
11
12
17
1.63
1743314--1743353
19
2.1
19
100
0
80
40
10
15
35
1.80
1744209--1744256
23
2.1
23
96
0
87
12
25
47
14
1.79
1744209--1744262
23
2.5
21
88
8
74
14
24
44
16
1.85
1745681--1745728
19
2.5
20
82
3
62
29
10
8
52
1.65

Tables:   1   2   3   4   5   6   7   8   9

The End!