genome.fa.s2881.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002881.1 Hibiscus syriacus cultivar Beakdansim tig00005939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1746118

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 968 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
838776--838844	29	2.3	30	82	5	95	42	4	4	49	1.42
838808--838997	36	5.2	38	81	8	223	43	6	4	45	1.50
838808--838995	71	2.6	73	86	5	263	43	6	4	45	1.50
842368--842419	15	3.2	17	72	22	58	36	21	0	42	1.53
842781--842846	31	2.1	31	88	0	96	43	13	10	31	1.78
846872--846910	19	2.0	20	85	5	53	30	0	2	66	1.05
848523--848593	32	2.2	32	87	0	97	52	5	0	42	1.25
848540--848583	11	4.2	10	77	11	52	54	0	0	45	0.99
854874--854918	20	2.2	20	96	0	81	35	6	26	31	1.82
854945--854979	17	2.1	17	89	5	54	37	5	5	51	1.50
855765--855814	23	2.1	24	85	3	66	42	6	0	52	1.26
856986--857037	15	3.2	17	72	22	58	38	19	0	42	1.51
868709--869007	146	2.0	147	94	2	521	37	19	15	28	1.92
869502--869659	66	2.4	66	89	4	228	15	27	25	31	1.96
870115--870153	19	2.0	20	90	5	62	61	0	33	5	1.18
875688--875732	23	2.0	23	86	0	63	26	28	24	20	1.99
875711--876014	149	2.0	149	97	0	572	36	19	15	28	1.93
876495--876668	67	2.6	67	87	5	226	15	26	27	31	1.96
877583--877634	19	2.7	19	96	0	95	36	11	13	38	1.81
878835--878878	18	2.4	18	96	0	79	29	31	22	15	1.95
879620--879657	20	1.9	20	94	0	67	21	23	23	31	1.98
880812--880879	35	2.0	35	97	2	129	25	2	14	57	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
880876--880903	12	2.3	12	100	0	56	35	14	0	50	1.43
880841--880955	58	1.9	58	94	3	185	30	7	9	52	1.62
881503--881541	20	2.0	20	85	5	53	33	25	7	33	1.84
881573--881626	20	2.7	20	85	5	65	31	11	12	44	1.78
882367--882407	20	2.0	20	85	0	55	65	2	4	26	1.25
886625--886685	21	2.9	21	92	0	95	19	22	27	29	1.98
891423--891462	21	1.9	21	90	10	64	20	15	30	35	1.93
899401--899437	19	1.9	19	94	0	65	32	29	16	21	1.95
899575--899693	20	5.8	21	67	19	63	32	23	18	25	1.97
900515--900568	24	2.2	24	86	0	72	22	20	18	38	1.93
902831--902865	18	1.9	18	94	0	61	54	25	2	17	1.57
903043--903277	20	12.7	20	71	16	166	36	21	20	22	1.95
903068--903289	54	4.1	54	89	0	302	37	20	19	21	1.94
903043--903224	74	2.5	72	76	10	188	35	21	20	22	1.96
903196--903260	33	1.9	34	90	3	105	36	23	21	18	1.95
903412--903491	30	2.4	34	78	20	105	55	15	2	27	1.53
903427--903494	30	2.3	30	97	0	127	55	13	1	29	1.46
904871--904972	42	2.5	41	75	3	114	23	20	34	21	1.97
905449--905494	20	2.3	20	96	0	83	54	19	10	15	1.70
905479--905567	20	4.4	20	91	0	133	33	23	19	23	1.97
905539--905619	33	2.4	34	89	4	128	38	23	20	17	1.93
905625--905770	20	7.6	20	74	9	133	18	19	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
905623--905762	40	3.7	39	78	9	164	20	20	22	37	1.95
907771--907811	20	2.0	20	90	0	64	56	19	14	9	1.66
908210--908282	22	3.3	22	98	0	137	19	15	45	20	1.86
908446--908530	20	4.2	20	80	8	100	22	21	27	29	1.99
908477--908551	21	3.6	21	78	10	91	17	24	28	30	1.97
908461--908551	41	2.2	41	96	0	164	18	23	28	29	1.98
908540--908612	20	3.7	20	90	0	119	21	17	17	42	1.89
908686--908732	19	2.4	19	82	3	58	25	14	29	29	1.95
908698--908734	19	1.9	19	94	0	65	21	16	29	32	1.95
913690--913714	13	1.9	13	100	0	50	44	8	8	40	1.63
923632--923670	14	2.8	14	96	0	69	28	15	23	33	1.95
925920--925970	20	2.5	20	100	0	102	19	35	21	23	1.96
928263--928351	20	4.4	20	89	0	124	41	17	16	23	1.90
928384--928449	20	3.3	20	89	0	105	27	24	18	30	1.98
928425--928489	27	2.4	27	92	0	103	26	27	18	27	1.98
928479--928525	20	2.3	20	85	3	58	27	23	12	36	1.91
928499--928628	20	6.5	20	86	1	145	27	23	14	34	1.94
928701--928742	20	2.1	20	95	0	75	35	16	23	23	1.95
928704--928749	20	2.3	20	88	0	65	30	19	26	23	1.98
928646--928784	67	2.1	68	93	1	235	32	17	25	25	1.97
928914--929002	20	4.4	20	89	0	124	41	17	16	23	1.90
929035--929100	20	3.3	20	89	0	105	27	24	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929076--929140	27	2.4	27	92	0	103	26	27	18	27	1.98
929130--929176	20	2.3	20	85	3	58	27	23	12	36	1.91
929150--929279	20	6.5	20	86	1	145	27	23	14	34	1.94
929352--929407	20	2.8	20	83	0	67	32	14	25	28	1.94
928138--929594	651	2.2	651	98	0	2833	32	21	17	28	1.96
929297--929435	67	2.1	68	91	1	226	32	16	25	25	1.96
929592--929634	20	2.2	20	95	0	77	46	23	13	16	1.83
929789--929839	22	2.3	22	89	0	75	21	43	13	21	1.87
930096--930138	20	2.2	20	86	0	59	13	18	20	46	1.83
932081--932126	4	11.5	4	80	0	56	26	2	4	67	1.21
932270--932388	21	5.7	21	77	11	109	21	33	19	25	1.97
933706--933862	64	2.5	64	91	2	244	29	1	17	50	1.56
933920--933973	20	2.7	20	79	0	72	35	22	20	22	1.96
933884--934062	89	2.0	89	100	0	358	36	18	22	22	1.95
934012--934121	40	2.8	40	81	0	148	36	20	22	20	1.95
934012--934113	20	5.1	20	82	0	132	38	20	21	19	1.94
936587--936638	24	2.2	24	82	0	59	36	21	19	23	1.95
936750--936783	12	2.8	12	90	0	50	14	0	29	55	1.40
937377--937414	16	2.5	15	84	12	51	65	0	5	28	1.14
937590--937703	21	5.7	19	84	9	113	31	10	23	34	1.89
937570--937742	20	8.6	20	77	8	147	28	10	22	37	1.88
937887--937948	21	3.0	21	77	11	65	29	14	27	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937937--938009	20	3.6	21	73	12	71	20	13	24	41	1.89
937937--937995	21	2.9	21	80	10	68	23	13	22	40	1.89
939224--939437	106	2.0	106	94	0	374	32	21	7	38	1.82
940658--940738	22	3.7	22	86	3	119	18	27	23	30	1.98
941805--941881	36	2.1	37	90	4	129	20	10	16	51	1.73
941809--941890	36	2.3	36	89	0	128	21	9	17	51	1.74
942622--942680	14	4.4	14	67	16	52	38	0	3	57	1.15
942665--942745	42	2.0	41	87	2	117	43	2	1	53	1.22
942697--942789	33	2.7	35	77	12	104	46	2	1	50	1.20
944178--944308	63	2.1	63	98	0	253	39	7	7	45	1.61
947058--947207	38	4.0	38	73	10	155	16	10	33	40	1.82
955384--955433	2	25.0	2	100	0	100	50	0	0	50	1.00
956987--957086	28	3.4	28	77	14	112	48	10	6	36	1.61
960441--960557	62	1.9	61	89	1	180	19	23	31	25	1.98
961162--961205	22	2.0	22	86	8	63	52	0	0	47	1.00
962555--962584	15	2.0	15	100	0	60	20	33	13	33	1.91
964398--965307	275	3.3	275	90	1	1423	21	21	23	33	1.98
964398--965307	138	6.6	138	91	0	1432	21	21	23	33	1.98
965739--965811	34	2.1	34	94	0	128	35	4	6	53	1.47
966329--966399	21	3.4	21	86	7	108	23	26	30	18	1.97
968711--968812	10	9.5	11	66	25	51	46	0	0	51	1.14
968696--968811	42	2.7	42	82	11	148	46	0	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968696--968811	22	5.5	23	70	17	90	46	0	0	51	1.12
968711--968779	12	6.2	12	70	20	53	44	1	0	53	1.09
968701--968811	21	5.3	20	68	12	80	47	0	0	50	1.13
968474--968843	179	2.0	167	88	10	344	46	5	2	45	1.41
968839--968871	2	17.0	2	93	6	59	51	0	0	48	1.00
972207--972712	70	7.0	70	73	12	249	43	2	4	49	1.38
972123--972712	126	4.9	126	84	8	734	42	3	4	49	1.40
972137--972609	42	11.3	42	87	4	419	43	3	4	49	1.38
972606--972712	42	2.5	42	90	3	162	41	4	6	47	1.50
978366--978431	33	2.0	33	93	0	114	36	10	31	21	1.87

Tables:   1   2   3   4   5   6   7   8   9