genome.fa.s2881.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002881.1 Hibiscus syriacus cultivar Beakdansim tig00005939_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1746118

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 968 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978616--978660	20	2.2	20	92	0	72	31	11	20	37	1.87
981637--981680	20	2.1	21	87	4	63	31	29	22	15	1.95
982637--982763	31	4.1	31	79	10	143	26	18	21	33	1.96
982639--982766	62	2.1	61	85	8	179	27	19	20	32	1.97
982749--982850	30	3.4	30	90	1	152	22	20	25	31	1.98
984819--984888	34	2.1	34	84	5	90	22	28	15	32	1.95
985233--985276	22	2.0	22	90	0	70	13	27	40	18	1.88
985274--985313	20	2.0	20	100	0	80	20	15	15	50	1.79
985353--985396	22	2.0	22	90	0	70	13	27	40	18	1.88
985394--985433	20	2.0	20	100	0	80	20	15	15	50	1.79
985216--985460	120	2.0	121	99	0	483	24	19	22	33	1.97
988216--988272	20	2.8	19	82	10	60	17	26	31	24	1.97
988214--988276	21	3.1	20	80	11	74	15	25	34	23	1.95
988834--988884	26	2.0	26	100	0	102	45	0	15	39	1.47
990364--990418	21	2.6	21	82	8	67	23	3	5	67	1.28
1005622--1005705	14	5.9	14	74	23	77	75	0	13	11	1.06
1005622--1005713	8	11.6	8	79	16	95	76	0	13	10	1.03
1005621--1005728	32	3.4	31	82	11	130	76	0	13	9	1.01
1005634--1005707	24	3.0	24	86	9	105	77	0	12	10	1.01
1005653--1005707	23	2.2	25	90	9	87	80	0	10	9	0.92
1006651--1007020	105	3.5	105	93	0	607	37	17	22	21	1.94
1020433--1020681	123	2.0	124	99	0	491	24	9	28	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025186--1025248	23	2.6	24	78	19	60	50	1	0	47	1.10
1025220--1025266	22	2.1	23	88	4	69	44	2	0	53	1.12
1025256--1025309	23	2.3	23	84	6	65	51	0	1	46	1.11
1025368--1025432	25	2.5	26	78	14	73	53	1	1	43	1.19
1025515--1025612	33	3.3	31	72	22	77	51	2	0	46	1.12
1025561--1025593	13	2.4	14	90	5	50	69	0	0	30	0.88
1030760--1030822	33	1.9	34	93	6	112	22	15	22	39	1.92
1034244--1034276	9	3.6	9	95	4	57	0	21	0	78	0.75
1044200--1044247	23	2.1	23	88	0	69	31	4	27	37	1.76
1044697--1044742	15	3.0	15	84	6	65	21	2	17	58	1.49
1046614--1047278	330	2.0	332	98	0	1298	30	14	21	33	1.93
1056368--1057095	366	2.0	364	96	1	1341	20	13	26	39	1.89
1060968--1061011	2	22.5	2	86	4	63	47	2	2	47	1.27
1063473--1063508	12	3.0	12	95	0	63	0	0	11	88	0.50
1069473--1069579	42	2.6	42	81	1	135	24	22	23	29	1.99
1069367--1069758	215	1.8	214	92	1	660	33	15	19	31	1.93
1069766--1069883	59	2.0	59	96	0	218	32	16	22	28	1.96
1069940--1070026	42	2.1	41	81	8	97	24	16	24	35	1.94
1070398--1070600	53	3.8	53	88	1	282	29	19	27	23	1.98
1085265--1085294	4	7.8	4	92	7	53	76	0	0	23	0.78
1103385--1103423	16	2.5	15	83	4	51	35	2	7	53	1.43
1108196--1108273	26	3.0	26	96	0	138	34	20	21	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114193--1114292	50	2.0	50	100	0	200	32	2	24	42	1.66
1114719--1114841	30	4.0	31	76	7	124	29	16	21	33	1.95
1114719--1114837	61	1.9	63	84	3	161	29	15	21	33	1.94
1119618--1119741	31	4.0	31	81	5	142	28	17	21	32	1.96
1119618--1119737	63	1.9	62	85	8	163	28	17	21	32	1.96
1121416--1121691	137	2.0	138	95	4	504	42	10	24	21	1.85
1121753--1121842	44	2.0	45	97	2	173	37	0	20	42	1.52
1123802--1123869	23	3.0	23	86	0	82	20	26	25	27	1.99
1128007--1128046	21	1.9	21	85	10	55	35	10	2	52	1.48
1130031--1130068	20	1.9	20	94	0	67	18	15	34	31	1.92
1132831--1133385	84	6.7	83	83	5	626	22	18	25	32	1.97
1133432--1133724	116	2.6	116	92	1	475	24	19	24	30	1.98
1133739--1133954	116	1.9	116	90	0	342	25	20	22	31	1.98
1135952--1136019	35	1.9	36	85	8	95	60	7	17	14	1.57
1143305--1143345	21	1.9	22	90	5	66	60	4	4	29	1.38
1147240--1147272	17	1.9	17	93	0	57	24	3	6	66	1.28
1148516--1149597	542	2.0	542	95	0	1968	36	15	17	30	1.91
1150084--1150108	13	1.9	13	100	0	50	60	16	0	24	1.36
1151691--1151728	18	2.0	20	85	10	53	13	0	28	57	1.36
1151942--1152300	133	2.7	135	85	5	494	25	20	20	33	1.96
1152564--1152617	22	2.4	22	75	9	56	9	0	42	48	1.35
1153081--1153142	29	2.1	29	84	6	79	40	11	9	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1153529--1153553	2	12.5	2	100	0	50	52	0	0	48	1.00
1158124--1158238	59	1.9	60	84	5	153	38	19	12	30	1.88
1162935--1163001	22	3.0	22	95	2	116	25	28	26	19	1.99
1164702--1164746	21	2.1	21	87	0	63	15	24	28	31	1.96
1167168--1167631	136	3.4	134	89	2	653	24	17	23	34	1.96
1167829--1167865	13	2.8	13	95	0	65	21	18	13	45	1.84
1169157--1169196	21	1.9	21	94	0	71	45	2	0	52	1.14
1169417--1169453	18	2.1	18	94	0	65	59	13	0	27	1.35
1171856--1171902	23	2.1	22	84	11	60	57	8	2	31	1.41
1171856--1171902	22	2.1	23	84	11	62	57	8	2	31	1.41
1172275--1172331	28	2.0	29	89	3	89	40	3	22	33	1.71
1173361--1173764	55	7.3	55	91	0	637	35	19	11	34	1.88
1174102--1174305	95	2.2	93	76	7	214	27	21	11	40	1.87
1174639--1174842	95	2.2	93	76	7	214	27	20	11	40	1.87
1173847--1174921	537	2.0	537	99	0	2105	29	21	11	37	1.88
1182690--1182841	75	2.0	75	93	0	259	30	13	22	33	1.93
1182930--1182976	24	1.9	25	91	4	78	46	17	6	29	1.72
1183793--1183873	32	2.5	32	91	0	135	39	22	7	30	1.81
1188284--1188424	64	2.2	65	96	1	257	31	29	19	19	1.96
1190319--1190385	27	2.7	23	73	13	62	40	14	19	25	1.90
1190762--1190799	15	2.4	16	86	8	60	5	15	50	28	1.66
1190554--1191014	233	2.0	235	91	3	759	23	11	27	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1190967--1191053	36	2.4	37	88	9	142	12	11	39	36	1.80
1192253--1192288	14	2.6	14	90	0	63	13	13	13	58	1.64
1192553--1192597	13	3.7	13	74	17	51	17	8	11	62	1.53
1192551--1192601	23	2.2	23	92	0	84	15	9	13	60	1.58
1192603--1192641	10	3.9	10	86	0	51	7	15	20	56	1.63
1192603--1192640	20	1.9	20	88	0	58	7	15	21	55	1.66
1196666--1196690	11	2.3	11	100	0	50	8	8	12	72	1.29
1197934--1197975	21	2.0	21	100	0	84	4	57	23	14	1.56
1215534--1215567	13	2.6	13	100	0	68	41	17	8	32	1.80
1217390--1217449	20	2.9	21	87	7	86	30	23	26	20	1.98
1217483--1217527	22	2.0	22	86	4	63	28	31	26	13	1.94
1218821--1219033	103	2.1	103	96	0	390	25	14	23	36	1.92
1219057--1219117	23	2.7	23	92	0	95	19	27	26	26	1.99
1222774--1222827	20	2.6	21	91	8	92	29	22	29	18	1.97
1222867--1222911	22	2.0	22	86	4	63	28	31	26	13	1.94
1224213--1224406	103	1.9	103	96	0	361	28	11	23	36	1.90
1224434--1224501	23	3.0	23	86	0	82	20	25	26	27	1.99
1226203--1226265	24	2.6	24	97	0	117	34	20	25	19	1.96
1232104--1232161	20	2.9	20	92	0	98	20	15	32	31	1.94
1235756--1235786	15	2.1	15	93	0	53	45	0	0	54	0.99
1236137--1236200	33	2.0	32	93	3	110	42	14	1	42	1.54
1236685--1236721	2	18.5	2	100	0	74	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1242028--1242085	22	2.7	22	97	2	109	24	20	25	29	1.99
1242074--1242141	35	2.0	34	82	2	82	26	14	29	29	1.95
1242109--1242164	22	2.5	22	85	0	85	26	14	26	32	1.95
1242367--1242430	19	3.2	20	86	6	76	50	9	12	28	1.71
1245584--1245682	22	4.5	22	96	0	162	21	19	28	31	1.97
1245828--1245854	2	13.5	2	100	0	54	0	48	0	51	1.00
1245854--1245886	2	16.5	2	100	0	66	48	0	0	51	1.00
1253442--1253478	15	2.5	15	90	0	56	40	8	21	29	1.82
1253408--1253466	30	2.0	30	82	0	73	38	1	20	38	1.63
1253765--1253807	18	2.4	18	80	7	52	44	9	16	30	1.79

Tables:   1   2   3   4   5   6   7   8   9