genome.fa.s295.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000295.1 Hibiscus syriacus cultivar Beakdansim tig00000541_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2017499

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1002 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1885774--1885807	13	2.7	13	90	4	52	17	23	38	20	1.93
1885794--1885840	18	2.6	18	86	0	67	12	21	46	19	1.82
1887888--1887939	24	2.2	24	82	0	59	50	17	11	21	1.77
1887911--1888026	24	4.8	24	86	6	155	41	18	16	23	1.90
1887911--1888044	24	5.6	24	84	5	146	43	18	14	23	1.87
1887887--1888049	72	2.3	71	78	7	179	47	17	12	22	1.82
1890156--1890188	17	2.0	17	88	5	50	27	9	21	42	1.83
1892456--1892507	24	2.2	24	82	0	59	50	17	11	21	1.77
1892476--1892594	24	5.0	24	87	6	143	41	19	15	23	1.90
1892515--1892612	48	2.0	48	84	3	126	42	19	14	23	1.87
1895066--1895099	15	2.3	15	89	0	50	26	23	32	17	1.97
1895088--1895117	13	2.3	13	94	0	51	16	23	43	16	1.87
1895094--1895154	18	3.7	18	70	20	60	16	18	47	18	1.83
1895112--1895147	13	2.8	13	91	0	63	16	13	50	19	1.79
1895092--1895152	31	2.0	31	90	0	95	18	16	47	18	1.83
1896446--1896651	65	3.2	63	81	8	202	30	23	17	28	1.97
1905057--1905218	65	2.5	65	83	1	191	32	24	16	27	1.96
1913556--1913585	15	2.0	15	100	0	60	66	6	0	26	1.16
1914314--1914428	55	2.1	55	95	0	203	33	13	16	35	1.88
1921028--1921102	24	3.1	22	85	9	69	41	20	14	24	1.89
1921038--1921120	12	6.8	13	65	15	61	37	22	18	21	1.94
1921038--1921125	24	3.7	24	89	0	131	36	21	19	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1948524--1948598	24	3.1	22	85	9	69	41	20	14	24	1.89
1948534--1948599	12	5.4	13	66	14	50	37	22	16	22	1.93
1948534--1948614	24	3.4	24	87	0	117	37	20	18	23	1.94
1949575--1949609	18	1.9	18	88	0	52	28	17	0	54	1.43
1950841--1950875	18	1.9	18	100	0	70	14	22	45	17	1.84
1956202--1956240	18	2.1	19	85	4	53	64	5	10	20	1.44
1983754--1983800	18	2.6	18	93	0	85	12	19	48	19	1.80
1983825--1983874	9	5.1	10	79	11	59	38	26	20	16	1.92
1990107--1990133	11	2.5	11	100	0	54	40	7	25	25	1.82
1990957--1991005	21	2.3	21	82	0	62	20	18	44	16	1.86
1991008--1991051	10	4.6	10	80	8	56	36	29	20	13	1.91
1991008--1991052	19	2.4	19	92	0	72	35	28	20	15	1.93
1999777--1999827	24	2.1	24	81	0	57	39	15	15	29	1.89
1999791--1999837	24	2.0	24	86	0	67	34	17	19	29	1.94
1999817--1999864	24	2.0	24	87	0	69	29	18	22	29	1.98
1999823--1999870	24	2.0	24	83	0	60	33	18	20	27	1.96
2001637--2001666	7	4.3	7	91	0	51	33	13	0	53	1.40
2003390--2003422	16	1.9	18	88	11	52	48	3	9	39	1.50
2012037--2012309	81	3.4	80	85	2	368	32	24	21	20	1.97
2017212--2017474	78	3.4	79	78	9	279	31	27	18	22	1.97

Tables:   1   2   3   4   5   6   7   8   9

The End!