genome.fa.s3132.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003132.1 Hibiscus syriacus cultivar Beakdansim tig00006570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1555756

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 823 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
210616--210811	86	2.4	79	84	6	232	25	20	26	28	1.99
210655--210875	43	5.2	43	92	0	327	24	23	23	28	2.00
212648--212712	2	34.5	2	88	11	102	49	0	0	50	1.00
212648--212712	13	4.9	14	87	12	102	49	0	0	50	1.00
214964--214999	15	2.3	16	90	4	56	16	30	8	44	1.77
215014--215278	142	1.9	142	80	3	318	37	19	10	32	1.85
216015--216373	41	8.6	41	80	6	332	33	18	19	28	1.96
216015--216357	82	4.1	82	81	3	391	32	18	19	28	1.96
216015--216337	125	2.6	123	83	4	389	34	18	19	27	1.95
216015--216374	166	2.2	167	88	3	523	33	18	19	28	1.96
216056--216417	82	4.4	81	76	11	238	33	18	19	29	1.95
217731--217787	2	30.5	2	83	13	77	47	0	0	52	1.00
220078--220569	166	3.0	164	79	8	525	43	12	10	33	1.77
220126--220628	166	3.1	161	78	9	493	43	12	10	33	1.77
223327--223366	19	2.1	19	100	0	80	70	0	0	30	0.88
223328--223368	3	13.3	3	94	5	73	68	0	0	31	0.90
223881--223918	2	19.0	2	100	0	76	50	0	0	50	1.00
224295--224353	31	1.9	31	85	0	82	32	10	23	33	1.88
227282--227333	6	8.7	6	95	0	95	17	32	15	34	1.91
241228--241256	14	2.0	15	93	6	51	13	24	6	55	1.63
246143--246204	26	2.4	26	75	5	63	33	3	3	59	1.29
250461--250504	22	2.0	22	86	0	61	34	4	2	59	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
257112--257232	46	2.6	47	83	7	151	51	14	2	32	1.55
260297--260352	28	2.0	28	96	0	103	21	12	17	48	1.80
293408--293448	16	2.6	16	88	3	57	36	7	21	34	1.82
293453--293491	15	2.6	15	87	0	60	33	12	17	35	1.88
303580--303619	15	2.7	15	96	0	71	27	25	7	40	1.82
305951--306008	20	2.8	21	89	5	82	36	22	8	32	1.85
306949--306995	24	2.0	24	95	0	85	27	21	17	34	1.95
307909--307958	24	2.1	24	85	7	66	58	12	2	28	1.45
313519--313568	24	2.1	24	85	7	66	58	12	2	28	1.45
316480--316515	18	2.0	18	94	0	63	55	25	2	16	1.55
316889--317039	64	2.4	64	92	1	241	52	17	1	28	1.55
317018--317050	13	2.4	14	95	5	59	48	21	0	30	1.50
318882--319038	64	2.5	64	86	5	210	35	19	22	22	1.96
319026--319083	20	2.6	22	86	10	75	31	18	22	27	1.97
319860--319911	18	2.9	18	88	0	77	21	19	30	28	1.97
322917--323020	45	2.3	45	83	6	122	35	19	21	24	1.96
323048--323085	20	1.9	20	94	0	67	34	18	21	26	1.96
323860--323913	18	3.0	18	83	0	72	20	22	31	25	1.98
324882--324988	21	5.2	20	75	13	83	25	17	35	21	1.95
324887--324988	42	2.5	41	84	6	143	24	18	34	22	1.96
325128--325169	12	3.5	12	83	6	50	69	7	0	23	1.13
325332--325375	21	2.1	21	83	8	54	31	38	11	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325392--325441	21	2.4	21	79	0	55	32	34	14	20	1.92
326987--327035	19	2.5	20	90	3	82	51	14	18	16	1.77
327546--327597	20	2.6	20	96	0	95	17	11	25	46	1.81
335273--335297	2	12.5	2	100	0	50	48	0	0	52	1.00
339961--340042	26	3.2	26	89	0	128	28	25	37	8	1.85
343554--343674	60	2.0	61	98	1	235	32	16	24	26	1.96
346360--346489	67	1.9	67	100	0	260	25	26	12	36	1.91
360893--360929	10	3.7	10	85	0	56	56	18	21	2	1.54
361591--361631	22	1.9	21	90	5	64	24	0	4	70	1.06
372895--372980	18	4.8	18	74	5	75	38	18	10	32	1.85
373825--373868	23	1.9	23	85	0	61	20	47	11	20	1.80
375429--375486	21	2.8	21	89	0	89	20	22	36	20	1.95
379369--379408	15	2.7	15	92	0	62	32	27	27	12	1.93
379925--380080	64	2.4	64	77	10	149	26	16	19	37	1.93
386218--386251	15	2.3	15	89	0	50	35	32	17	14	1.91
386343--386416	29	2.5	29	97	2	139	16	22	16	44	1.86
386796--386951	64	2.5	63	79	9	174	26	17	19	35	1.94
391908--391957	24	2.1	24	85	7	66	22	2	16	60	1.46
398743--398794	20	2.6	21	84	6	63	15	17	0	67	1.24
405935--405967	15	2.2	15	94	0	57	45	0	24	30	1.53
408130--408187	20	2.6	22	89	10	84	31	20	22	25	1.98
408847--408933	18	4.8	18	88	0	102	19	17	31	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411977--412079	45	2.3	45	83	5	120	34	18	20	26	1.95
412086--412143	20	2.6	22	89	10	84	31	20	22	25	1.98
412813--412907	18	5.3	18	88	0	127	25	23	27	24	2.00
416621--416677	29	2.0	29	82	0	69	28	5	29	36	1.79
416862--416937	33	2.3	33	90	0	125	19	13	30	36	1.90
429437--429465	15	1.9	15	100	0	58	65	0	6	27	1.18
429946--430129	65	2.9	64	82	5	230	29	24	19	26	1.98
430077--430125	19	2.6	19	84	9	57	24	28	20	26	1.99
429896--430129	129	1.8	129	83	8	314	29	24	19	26	1.98
437062--437103	21	2.0	21	85	0	57	28	23	21	26	1.99
437217--437305	15	5.5	15	69	23	65	25	22	33	17	1.96
437216--437328	34	3.4	33	86	6	165	23	22	34	19	1.96
438732--438769	19	2.0	20	94	5	69	34	18	5	42	1.73
440268--440337	34	2.1	33	84	5	88	22	28	14	34	1.93
440600--440641	21	2.0	21	95	0	75	26	28	21	23	1.99
440769--440827	19	3.3	18	73	26	63	23	25	35	15	1.94
440753--440833	34	2.4	34	93	6	137	22	24	34	18	1.96
440754--440810	15	3.5	15	75	25	62	22	24	35	17	1.95
442203--442386	65	2.9	64	78	7	185	31	22	18	27	1.97
444053--444414	5	74.8	5	66	19	112	51	3	3	40	1.37
444073--444473	2	213.5	2	65	23	135	50	4	3	41	1.39
444073--444415	19	17.8	18	67	24	90	51	3	3	41	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444245--444409	39	4.3	38	74	12	126	50	1	4	43	1.32
444301--444413	49	2.2	50	84	10	149	50	0	3	45	1.25
444418--444459	5	8.8	5	84	10	52	40	14	2	42	1.58
444646--444734	33	2.6	33	79	12	90	34	16	20	28	1.94
445289--445337	18	2.5	20	75	24	52	28	8	2	61	1.36
457553--457594	18	2.4	18	84	7	52	52	0	2	45	1.13
463365--463406	21	2.0	21	90	4	68	26	21	30	21	1.98
463438--463462	12	2.1	12	100	0	50	16	20	24	40	1.91
463453--463491	19	2.0	20	90	5	62	17	17	12	51	1.76
467531--467591	23	2.7	23	86	0	95	31	27	24	16	1.96
468232--468393	63	2.5	64	81	4	168	25	17	22	33	1.96
468274--468393	64	1.9	63	85	1	168	25	16	22	35	1.95
474487--474540	23	2.5	23	91	8	87	29	25	25	18	1.98
475184--475335	61	2.5	61	82	5	173	26	18	19	35	1.95
483329--483764	218	2.0	218	97	2	824	38	11	12	37	1.79
495873--495916	21	2.0	22	82	4	54	43	4	13	38	1.65
501681--501727	10	4.9	10	82	15	55	17	4	6	72	1.22
501680--501727	19	2.5	19	89	0	78	16	6	6	70	1.28
501612--501821	110	1.9	112	93	3	361	40	3	7	48	1.50
504264--504294	2	15.5	2	100	0	62	48	0	0	51	1.00
505336--505373	16	2.3	17	90	4	60	73	2	5	18	1.14
505732--505763	16	1.9	17	93	6	57	40	0	6	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506075--506129	25	2.2	26	83	3	67	67	1	0	30	1.01
506418--506538	51	2.4	50	82	6	136	19	33	25	21	1.97
512738--512789	24	2.2	24	83	13	63	26	5	3	63	1.34
514846--514896	27	2.0	26	88	7	77	54	23	3	17	1.59
515876--515916	2	20.5	2	100	0	82	48	0	0	51	1.00
520807--520850	22	2.0	22	82	8	54	45	4	6	43	1.51
522308--522356	2	24.5	2	100	0	98	48	0	0	51	1.00
522750--523101	183	1.9	184	85	4	487	35	9	9	45	1.69
524055--524100	18	2.6	18	85	0	65	23	28	13	34	1.92
543778--544375	259	2.4	251	86	9	839	26	11	19	41	1.86

Tables:   1   2   3   4   5   6   7