genome.fa.s3132.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003132.1 Hibiscus syriacus cultivar Beakdansim tig00006570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1555756

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 823 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553453--553615	87	1.9	87	97	0	308	41	11	14	33	1.81
553751--554047	162	1.8	162	93	0	513	25	16	12	44	1.84
553768--554103	162	2.1	159	82	6	390	26	18	12	42	1.86
553877--554570	182	3.8	182	95	1	1234	27	17	13	41	1.87
553877--554569	361	1.9	361	96	0	1271	27	17	13	41	1.87
557277--557611	179	1.8	182	92	3	568	34	16	13	36	1.87
558898--558937	12	3.3	12	85	0	53	20	32	7	40	1.80
560435--561422	200	4.9	200	97	0	1832	30	18	14	36	1.91
561657--561705	19	2.6	19	90	6	73	57	8	2	32	1.40
563257--563344	33	2.7	33	92	3	142	3	44	0	52	1.18
563532--563597	33	2.0	33	93	0	114	22	46	0	30	1.52
563634--563674	21	2.0	21	90	0	64	19	26	12	41	1.87
564215--564239	12	2.1	12	100	0	50	44	24	8	24	1.80
565900--566373	182	2.6	182	88	0	698	26	16	13	43	1.86
567100--567158	20	3.0	19	76	9	55	22	16	8	52	1.70
566885--567358	182	2.6	181	87	1	689	26	16	13	43	1.85
565577--567525	985	2.0	985	96	0	3601	29	17	13	39	1.88
571666--571704	20	2.0	20	84	0	51	23	7	23	46	1.78
571876--571936	20	2.9	21	87	7	79	18	24	34	22	1.96
581085--581146	23	2.7	23	97	0	115	20	19	30	29	1.97
581156--581204	3	16.7	3	91	4	82	67	0	0	32	0.91
581944--582009	34	1.9	34	93	0	114	28	6	7	57	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
588479--588510	17	1.9	17	93	6	57	31	6	3	59	1.38
589441--589477	20	1.9	19	89	10	58	45	5	24	24	1.74
589891--589928	3	12.7	3	83	10	51	68	28	0	2	1.03
589890--589928	15	2.6	14	88	11	60	69	28	0	2	1.02
607317--607358	21	1.9	22	85	9	59	35	7	4	52	1.50
612636--612668	16	2.1	16	88	5	50	33	9	3	54	1.47
613275--613326	16	3.2	17	72	22	58	42	0	21	36	1.53
616220--616255	15	2.4	15	90	0	54	58	2	0	38	1.13
628634--629353	229	3.1	229	95	0	1291	45	7	7	39	1.61
629402--629448	20	2.4	19	89	10	76	55	10	17	17	1.69
629583--629629	20	2.4	19	82	10	67	53	10	17	19	1.72
629592--629634	20	2.3	19	88	11	63	51	11	16	20	1.75
630292--630355	23	2.8	23	85	0	92	35	4	20	39	1.73
630774--630837	23	2.8	23	90	0	101	35	4	21	37	1.75
631254--631317	23	2.8	23	90	0	101	39	4	18	37	1.72
630235--633150	480	6.1	481	96	1	5358	41	7	11	40	1.69
631737--631800	23	2.8	23	90	0	101	35	4	21	37	1.75
632208--632271	23	2.8	23	90	0	101	35	4	21	37	1.75
632684--632744	23	2.8	23	85	7	83	34	4	22	37	1.76
633776--633816	20	2.2	19	86	8	57	56	2	2	39	1.26
634697--634735	3	13.0	3	100	0	78	66	0	0	33	0.92
639130--639176	23	2.0	23	100	0	94	36	12	12	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643166--643595	214	2.0	215	99	0	853	35	14	18	31	1.91
648692--648731	21	1.9	21	89	0	62	10	25	40	25	1.86
652573--652612	21	1.9	21	85	10	55	35	10	2	52	1.48
658055--658108	25	2.0	28	82	10	69	50	14	3	31	1.61
671217--671242	5	5.2	5	100	0	52	38	0	19	42	1.51
671345--671422	2	39.0	2	100	0	156	50	0	0	50	1.00
672008--672076	19	3.8	19	71	11	72	39	23	2	34	1.70
674542--674575	10	3.4	10	91	0	59	35	0	23	41	1.55
677994--678036	22	2.0	22	90	0	68	34	20	11	32	1.89
678016--678333	65	4.9	65	88	0	438	32	12	21	34	1.91
678850--678973	5	23.8	5	75	21	96	16	2	2	78	0.97
678855--678948	34	2.8	33	81	12	104	14	2	2	80	0.89
678861--678973	39	2.8	39	75	15	115	17	1	2	77	0.97
678849--678929	16	5.1	15	74	21	67	12	2	1	83	0.79
678844--678966	19	6.4	19	72	23	80	17	3	1	78	0.97
679026--679161	5	26.6	5	69	20	54	13	6	4	75	1.17
679026--679162	11	12.3	11	64	17	50	13	6	4	75	1.16
679026--679060	17	2.1	16	94	5	61	17	2	0	80	0.84
679071--679239	9	18.6	9	66	20	68	15	7	2	73	1.17
679041--679165	55	2.2	56	77	11	130	13	6	4	75	1.16
679071--679204	30	4.4	30	73	13	107	14	6	2	76	1.09
679098--679204	31	3.5	31	78	10	103	14	6	2	76	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679071--679242	14	12.8	13	71	19	72	15	7	2	73	1.17
679076--679238	48	3.2	49	76	17	124	15	7	3	73	1.18
679169--679227	22	2.6	23	78	13	59	13	11	1	72	1.19
679153--679239	37	2.3	39	82	13	101	17	8	2	72	1.19
681199--681255	22	2.6	22	100	0	114	29	22	21	26	1.99
681244--681512	64	4.2	64	79	9	221	36	19	16	27	1.94
682191--682254	30	2.1	30	85	0	83	18	18	28	34	1.95
683749--683811	20	3.2	19	90	4	90	66	11	11	11	1.45
684287--684513	112	2.0	114	91	3	370	30	26	9	33	1.88
689289--689364	35	2.2	35	92	0	125	39	23	1	35	1.63
689760--690002	130	1.9	127	89	4	382	36	14	12	36	1.85
689774--690033	130	2.0	124	78	7	263	39	13	13	34	1.83
692152--692191	20	2.0	21	90	5	64	32	20	25	22	1.98
698521--698563	22	2.0	22	86	8	63	48	2	0	48	1.14
698494--698554	31	2.0	31	83	6	79	50	1	0	47	1.10
698531--698596	22	2.9	22	77	13	71	48	1	3	46	1.26
699103--699147	20	2.3	19	81	7	54	44	4	2	48	1.35
702100--702193	31	3.0	31	92	0	143	23	18	21	37	1.94
703041--703091	21	2.5	20	85	14	70	23	13	11	50	1.74
705996--706073	31	2.5	31	87	4	104	21	17	17	42	1.89
706936--706986	21	2.5	20	85	14	70	23	13	11	50	1.74
707596--707674	22	3.6	22	81	10	99	40	3	6	49	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707596--707675	23	3.7	22	80	17	96	40	3	6	50	1.46
708894--709143	36	7.0	36	92	1	360	32	24	24	19	1.98
709225--709272	22	2.2	22	100	0	96	22	4	20	52	1.64
712335--712375	16	2.5	17	80	11	50	60	0	0	39	0.96
714712--714940	20	11.4	20	81	5	230	37	25	17	19	1.94
715633--715679	24	2.0	24	87	8	69	25	14	21	38	1.92
715854--715878	12	2.1	12	100	0	50	72	0	28	0	0.86
718141--718467	34	9.3	35	75	18	181	44	17	22	14	1.85
718174--718462	53	5.5	54	85	12	308	46	16	22	14	1.84
718202--718444	87	2.8	86	93	4	405	45	16	23	13	1.84
718439--718554	53	2.2	52	86	3	160	18	23	18	38	1.93
718477--718574	19	5.4	19	83	13	134	15	22	16	45	1.84
718539--718582	19	2.3	19	88	0	61	20	20	13	45	1.85
718681--718717	14	2.6	14	91	0	65	45	21	0	32	1.52
720695--720736	19	2.2	19	91	0	66	9	19	28	42	1.82
720701--720745	19	2.4	19	100	0	90	6	15	31	46	1.72
720736--720773	14	2.7	14	95	0	67	7	23	26	42	1.81
720839--721111	93	3.1	87	90	6	333	44	19	13	23	1.85
720889--721111	93	2.4	93	99	0	437	44	18	13	22	1.85
722798--722894	20	5.2	20	72	18	100	46	17	24	11	1.81
722797--722918	33	3.4	35	89	8	144	46	18	23	10	1.80
722797--722860	21	3.1	21	81	4	94	48	15	25	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
722845--722901	14	3.7	14	75	20	60	43	22	24	8	1.81
722837--722918	33	2.5	33	100	0	164	47	19	23	9	1.79
722935--722991	14	3.7	14	70	20	51	8	24	22	43	1.81
722919--722994	33	2.3	33	95	0	134	7	22	23	46	1.78
722919--722973	19	3.2	19	68	24	57	5	21	27	45	1.74
722979--723052	21	3.5	21	80	7	96	13	21	17	47	1.82
723132--723202	33	2.2	33	94	0	124	47	16	23	11	1.79
723582--723774	20	9.6	20	82	5	219	19	19	26	34	1.95
730766--731965	598	2.0	598	99	0	2355	30	24	19	25	1.98
732937--732977	18	2.3	18	91	4	66	63	2	4	29	1.28

Tables:   1   2   3   4   5   6   7