genome.fa.s3132.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01003132.1 Hibiscus syriacus cultivar Beakdansim tig00006570_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1555756

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 823 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1350658--1350703	23	2.0	24	82	4	58	26	15	15	43	1.85
1351430--1351485	22	2.6	22	94	2	96	21	10	14	53	1.70
1354069--1354103	18	1.9	18	100	0	70	17	22	34	25	1.96
1355897--1355932	11	3.2	11	84	7	54	22	22	19	36	1.95
1356030--1356063	15	2.3	15	89	0	50	55	2	38	2	1.30
1356038--1356066	15	1.9	15	100	0	58	48	3	41	6	1.47
1356118--1356155	9	4.2	9	83	10	51	31	0	2	65	1.06
1356191--1356239	21	2.3	20	83	16	64	26	0	16	57	1.40
1356310--1356368	27	2.1	28	84	9	77	32	1	16	49	1.56
1356574--1356613	21	1.9	21	100	0	80	27	0	15	57	1.38
1356792--1356856	30	2.2	30	91	0	103	36	0	15	47	1.46
1356830--1356892	22	2.8	22	79	15	76	42	1	14	41	1.55
1359167--1359287	59	2.1	56	84	4	152	49	8	2	39	1.46
1359178--1359255	24	3.3	24	76	18	67	52	7	1	38	1.38
1359209--1359269	14	4.7	14	75	17	51	50	6	1	40	1.38
1359142--1359269	38	3.5	37	70	15	104	46	8	3	41	1.50
1359359--1359503	26	5.7	26	90	1	197	44	5	2	47	1.40
1359372--1359503	14	10.1	13	79	15	139	43	6	2	47	1.40
1360637--1360675	17	2.3	17	86	8	53	46	12	0	41	1.42
1361020--1361073	28	1.9	28	96	0	99	57	12	0	29	1.36
1361016--1361080	28	2.3	28	84	10	96	55	10	0	33	1.35
1361050--1361098	21	2.3	21	85	3	71	53	16	0	30	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362666--1362730	30	2.1	31	83	8	80	38	1	1	58	1.17
1366694--1366744	20	2.6	19	87	6	66	74	0	3	21	0.98
1366694--1366746	23	2.3	23	81	12	63	73	0	3	22	0.99
1367450--1367626	84	2.1	82	93	3	275	55	12	2	28	1.51
1367402--1367626	85	2.7	84	92	2	353	55	12	2	29	1.49
1368982--1369019	2	19.0	2	100	0	76	50	0	0	50	1.00
1369895--1369988	30	3.1	30	89	3	127	31	27	20	20	1.97
1369976--1370076	31	3.2	31	78	8	123	33	17	18	29	1.95
1371487--1371531	21	2.1	21	87	0	63	15	24	28	31	1.96
1374442--1374530	30	3.0	30	91	1	135	31	26	21	20	1.98
1374526--1374626	31	3.2	31	78	8	123	33	17	18	29	1.95
1376041--1376085	21	2.1	21	87	0	63	15	24	28	31	1.96
1378999--1379087	30	3.0	30	91	1	135	31	26	21	20	1.98
1379083--1379183	31	3.2	31	78	8	123	33	17	18	29	1.95
1380527--1380571	21	2.1	21	87	0	63	15	24	28	31	1.96
1384935--1385008	20	3.7	20	71	20	64	66	0	10	22	1.23
1385032--1385074	18	2.4	18	92	0	68	72	0	6	20	1.08
1385672--1385897	85	2.7	86	93	3	388	55	12	1	30	1.47
1398469--1398787	43	7.4	43	86	2	392	27	20	22	28	1.99
1398935--1398993	21	2.8	21	78	0	64	57	20	5	16	1.58
1401942--1402290	41	8.4	41	69	9	165	32	16	19	31	1.94
1401968--1402255	84	3.5	83	81	4	278	31	17	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1402064--1402279	81	2.6	82	82	3	220	31	17	19	31	1.95
1418103--1418135	16	2.1	16	94	0	57	63	0	3	33	1.10
1418105--1418142	16	2.5	15	87	8	51	65	0	2	31	1.06
1418132--1418189	21	2.7	22	82	12	68	58	0	1	39	1.08
1418153--1418194	20	2.2	20	83	12	52	57	0	0	42	0.99
1418142--1418206	23	2.9	23	82	13	66	50	0	1	47	1.10
1418261--1418339	24	3.2	24	77	14	72	55	3	1	39	1.26
1418246--1418340	23	4.0	23	79	8	93	55	3	1	40	1.23
1421370--1421476	42	2.6	41	80	13	107	43	7	18	29	1.77
1422656--1422689	11	2.9	12	86	8	52	29	0	0	70	0.87
1422681--1422713	17	1.9	17	93	0	57	15	3	6	75	1.11
1428685--1428721	20	1.9	20	94	5	67	32	2	2	62	1.23
1428986--1429029	2	22.0	2	100	0	88	50	0	50	0	1.00
1429720--1429754	7	5.3	7	96	3	56	0	40	0	60	0.97
1430860--1430954	22	4.3	22	88	6	129	27	18	21	32	1.97
1437674--1437736	22	2.9	22	92	0	99	25	20	23	30	1.99
1444130--1444981	6	143.0	6	97	2	1630	33	0	16	50	1.46
1451094--1451202	31	3.5	31	75	7	112	34	18	16	30	1.93
1452328--1452398	19	3.7	19	98	0	133	21	28	16	33	1.95
1456088--1456130	16	2.9	15	86	6	52	13	13	0	72	1.13
1469354--1469410	22	2.6	22	82	0	69	22	40	17	19	1.91
1469740--1469778	20	2.0	20	89	0	60	58	15	7	17	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1469785--1469838	20	2.8	20	85	2	74	14	16	20	48	1.81
1471158--1471254	42	2.3	42	87	0	131	28	35	17	18	1.94
1481198--1481247	21	2.4	21	79	0	64	18	12	34	36	1.87
1481470--1481503	4	8.5	4	86	0	50	26	0	2	70	1.01
1481649--1481765	21	5.6	21	78	8	121	23	36	17	22	1.95
1481647--1481765	42	2.8	42	90	0	175	22	36	17	22	1.94
1483356--1483430	20	3.8	20	87	0	105	18	16	22	42	1.88
1483327--1483469	49	3.1	49	73	17	178	24	18	20	36	1.95
1485962--1486016	24	2.3	24	87	3	85	41	18	18	21	1.90
1492231--1492292	23	2.9	21	83	7	72	20	32	25	20	1.98
1496562--1496653	20	4.6	20	75	14	73	34	10	20	33	1.88
1512041--1512080	3	13.3	3	83	0	53	40	2	0	57	1.12
1512976--1513029	23	2.3	23	93	3	90	42	27	7	22	1.80
1523310--1523495	104	1.8	101	89	5	293	31	8	13	46	1.74
1525476--1525606	55	2.4	55	83	1	165	45	12	21	19	1.84
1528449--1528511	31	2.0	31	90	0	99	28	17	17	36	1.93
1533558--1533601	22	2.0	22	90	4	70	79	4	15	0	0.89
1533559--1533601	12	3.8	12	90	9	72	81	4	13	0	0.84
1534773--1535003	50	4.6	51	87	4	324	35	16	25	21	1.95
1534773--1535003	101	2.3	101	85	3	322	35	16	25	21	1.95
1534999--1535079	41	2.0	40	85	2	108	35	6	20	37	1.78
1536500--1536756	43	6.0	43	87	4	378	27	15	30	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1536500--1536740	84	2.9	84	88	4	360	27	15	30	25	1.96
1536794--1536855	20	3.0	20	74	11	63	20	25	25	27	1.99
1536837--1537123	89	3.2	90	92	2	472	26	18	21	33	1.96
1537105--1537229	42	3.0	42	88	2	180	25	20	19	35	1.95
1537257--1537603	136	2.6	136	88	2	524	34	16	21	27	1.94
1537541--1538148	105	5.6	107	86	7	748	38	16	20	25	1.92
1538073--1538241	91	1.9	91	91	2	277	39	15	21	24	1.92
1538955--1538997	11	3.9	11	79	11	52	46	32	2	18	1.62
1538960--1539006	22	2.1	22	84	7	60	46	38	0	14	1.45
1540397--1540597	102	2.0	102	85	3	271	32	9	12	45	1.75
1541096--1541162	9	7.6	9	73	18	52	38	0	1	59	1.06
1541100--1541183	33	2.5	34	94	1	152	39	0	1	59	1.05
1543708--1543749	20	2.1	20	95	0	75	47	14	7	30	1.71
1553882--1553921	21	1.9	21	90	10	64	57	7	5	30	1.48
1555667--1555700	15	2.3	15	89	0	50	14	17	32	35	1.91

Tables:   1   2   3   4   5   6   7

The End!