genome.fa.s402.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000402.1 Hibiscus syriacus cultivar Beakdansim tig00000738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1701760

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 816 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
278336--278371	18	2.0	18	94	0	63	16	2	25	55	1.55
280625--280678	24	2.2	24	93	0	90	40	20	18	20	1.91
280625--280692	24	2.8	24	84	0	64	38	20	17	23	1.93
281387--281424	16	2.5	15	88	12	60	68	0	2	28	1.03
281619--281665	20	2.3	20	92	0	76	21	17	25	36	1.94
281631--281706	20	3.8	21	79	6	77	25	14	30	30	1.95
283462--283514	2	26.5	2	96	0	97	49	0	1	49	1.12
292615--292750	69	2.0	69	92	0	227	27	37	2	33	1.69
294651--294965	162	1.9	162	98	0	603	40	9	6	44	1.62
298430--298546	39	3.0	39	96	1	209	33	2	15	48	1.58
300502--300743	81	3.0	81	93	1	396	41	35	4	18	1.71
303558--303635	41	1.9	41	97	0	147	39	24	7	28	1.83
326852--327014	52	3.1	50	83	8	200	43	3	7	46	1.47
328557--328594	18	2.1	18	95	0	67	26	28	28	15	1.96
329017--329041	11	2.3	11	100	0	50	8	64	20	8	1.46
330238--330274	12	3.1	12	92	0	56	32	8	16	43	1.77
334174--334232	24	2.5	24	94	0	109	38	16	15	28	1.89
336229--336253	11	2.3	11	100	0	50	8	64	20	8	1.46
337218--337255	20	1.9	20	88	0	58	21	26	10	42	1.85
338743--338861	60	2.0	60	86	0	166	31	11	15	40	1.84
339491--339532	22	2.0	22	85	4	59	47	4	0	47	1.23
339571--339620	26	2.0	25	84	11	66	44	2	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341508--341550	16	2.6	16	81	7	50	27	20	20	30	1.98
348108--348230	38	3.2	38	89	4	185	44	10	12	32	1.76
362784--362882	30	3.3	30	95	0	171	19	17	35	28	1.94
364406--364483	29	2.7	28	82	4	75	33	6	14	46	1.70
369000--369045	16	2.9	16	93	0	83	30	23	30	15	1.95
369727--369887	65	2.5	65	89	5	256	27	18	22	30	1.98
369728--369935	65	3.2	65	83	8	255	26	17	24	31	1.97
372606--372678	20	3.7	20	94	0	110	16	28	28	26	1.97
378541--378748	65	3.2	65	84	8	264	26	18	24	31	1.97
379445--380799	4	338.8	4	95	0	2293	47	24	2	25	1.64
382423--382518	48	2.0	48	85	6	131	54	6	8	31	1.55
383066--383117	27	1.9	27	92	0	86	38	9	17	34	1.82
386280--386305	11	2.4	11	100	0	52	65	0	11	23	1.25
388236--388267	6	5.2	6	92	7	55	68	0	0	31	0.90
400151--400203	15	3.6	14	78	9	52	9	15	0	75	1.04
400272--400397	43	3.0	42	79	3	137	31	22	19	26	1.97
400389--400529	75	1.9	75	92	0	237	39	16	10	33	1.83
411937--415084	261	11.7	262	79	9	2913	33	18	22	26	1.96
411923--415084	541	5.8	541	85	4	4080	33	17	22	26	1.97
413784--415084	282	4.7	280	85	5	1577	33	17	22	26	1.96
416401--416795	158	2.5	157	86	2	526	27	20	6	45	1.76
416423--416821	157	2.5	157	83	4	502	27	18	7	46	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418054--418091	19	2.0	19	100	0	76	31	5	15	47	1.68
418343--418370	14	2.0	14	100	0	56	21	14	28	35	1.92
418516--418883	154	2.4	156	86	3	501	29	19	7	43	1.79
420151--420227	20	3.8	20	86	6	93	38	12	18	29	1.88
420157--420227	21	3.5	19	88	5	88	38	12	18	30	1.88
420725--420785	19	3.2	18	75	11	59	50	1	3	44	1.28
421993--422331	170	2.0	171	97	1	637	28	11	10	48	1.72
423067--423125	25	2.5	22	77	15	64	42	5	3	49	1.41
423075--423140	25	2.6	25	80	4	78	42	3	3	51	1.32
423070--423163	27	3.6	27	78	5	93	40	4	2	53	1.32
423297--423371	31	2.4	31	93	0	123	48	13	9	29	1.73
423728--423783	23	2.4	24	90	3	87	41	5	12	41	1.66
431992--432481	248	2.0	246	92	1	811	35	20	13	30	1.91
442639--442673	14	2.5	14	100	0	70	37	14	0	48	1.44
442688--442727	21	1.9	21	94	0	71	37	17	10	35	1.83
451270--451317	22	2.2	22	88	0	69	54	22	10	12	1.68
451270--451317	11	4.4	11	81	0	51	54	22	10	12	1.68
451319--451369	24	2.2	23	89	3	75	45	19	15	19	1.86
451387--451450	24	2.7	23	75	2	56	43	14	15	26	1.85
451841--451866	2	13.0	2	100	0	52	50	0	0	50	1.00
453787--453823	16	2.4	16	90	4	58	27	10	16	45	1.80
453897--453935	16	2.4	16	91	0	60	23	12	17	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453725--454000	112	2.5	112	97	0	516	28	10	15	44	1.80
455213--455243	2	15.5	2	100	0	62	51	0	0	48	1.00
459079--459137	29	2.0	29	86	0	82	47	13	3	35	1.60
459438--459497	28	2.1	28	100	0	120	46	3	13	36	1.60
462523--462547	2	12.5	2	100	0	50	52	0	0	48	1.00
468766--468799	17	2.0	17	88	11	52	52	29	17	0	1.45
469193--469257	17	3.6	17	75	17	51	67	3	1	27	1.14
469237--469262	12	2.2	12	100	0	52	73	0	0	26	0.84
472152--472219	23	3.0	23	84	0	91	17	23	26	32	1.97
474930--475069	46	3.0	46	74	17	137	45	5	25	25	1.73
475071--475166	26	3.7	26	80	2	113	45	6	29	18	1.74
475372--475619	102	2.4	101	76	6	243	28	5	31	35	1.79
476100--476346	2	119.0	2	76	11	221	49	2	2	44	1.31
476269--476444	11	16.5	11	65	20	54	50	3	5	40	1.45
476023--476444	20	20.1	21	72	16	213	48	3	4	43	1.42
476112--476434	62	4.9	63	76	15	257	49	3	4	42	1.39
476394--476504	22	5.0	22	70	7	71	53	5	5	36	1.47
476410--476512	15	6.3	16	70	15	68	54	4	5	34	1.46
476454--476526	16	4.9	14	75	17	58	53	5	4	36	1.43
476484--476523	22	1.9	22	90	10	66	52	5	2	40	1.37
476486--476573	14	6.7	13	72	23	53	48	4	2	44	1.35
476454--476551	29	3.3	28	76	13	72	48	5	4	41	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476520--476575	22	2.4	22	82	11	58	46	3	1	48	1.30
477462--477549	31	2.8	31	84	0	113	34	19	17	29	1.94
480158--480216	31	1.9	31	92	0	100	40	6	10	42	1.65
480241--480283	22	2.0	22	95	0	77	51	11	0	37	1.39
480243--480291	22	2.2	22	85	3	62	55	12	0	32	1.37
480231--481111	54	16.4	54	83	7	1084	52	12	0	34	1.44
480295--480337	22	2.0	22	95	0	77	51	11	0	37	1.39
480297--480345	22	2.2	22	85	3	62	55	12	0	32	1.37
480349--480391	22	2.0	22	100	0	86	51	13	0	34	1.42
480457--480499	22	2.0	22	100	0	86	51	13	0	34	1.42
480516--480637	26	4.6	26	69	22	92	53	16	0	29	1.49
480300--481012	80	8.9	80	80	14	790	52	13	0	33	1.46
480589--480658	21	3.1	21	74	18	77	52	17	0	30	1.44
480670--480712	22	2.0	22	95	0	77	53	11	0	34	1.37
480672--480720	22	2.2	22	85	3	62	57	12	0	30	1.36
480724--480766	22	2.0	22	100	0	86	51	13	0	34	1.42
480726--480774	22	2.2	22	88	3	71	55	14	0	30	1.40
480778--480820	22	2.0	22	100	0	86	51	13	0	34	1.42
480837--480958	26	4.6	26	69	22	92	52	17	0	29	1.50
480300--481111	321	2.5	322	97	0	1518	52	13	0	33	1.45
480914--480988	22	3.2	23	75	17	82	54	17	0	28	1.43
480992--481034	22	2.0	22	95	0	77	53	9	0	37	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481046--481146	22	4.5	22	70	7	85	51	8	0	39	1.33
481091--481178	15	5.5	15	76	18	88	52	3	0	44	1.18
480957--481201	54	4.9	47	84	11	212	51	8	0	40	1.33
482562--482751	98	1.9	100	81	7	235	45	7	8	38	1.64
482692--482757	27	2.6	25	76	9	78	57	7	1	33	1.36
483497--483549	3	18.0	3	84	11	74	33	0	0	66	0.92
483497--483556	14	4.2	15	85	12	65	35	1	0	63	1.05
483497--483556	30	2.0	30	83	6	77	35	1	0	63	1.05
483621--483669	25	2.0	25	100	0	98	36	22	16	24	1.94
490318--490365	12	3.9	12	83	10	53	72	12	10	4	1.24

Tables:   1   2   3   4   5   6   7