genome.fa.s402.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000402.1 Hibiscus syriacus cultivar Beakdansim tig00000738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1701760

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 816 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490325--490360	11	3.2	11	92	4	54	72	11	11	5	1.28
491532--491569	4	9.5	4	94	0	58	50	28	0	21	1.49
492034--492271	103	2.3	103	81	5	268	30	19	12	38	1.88
492232--492336	36	3.0	36	80	5	117	32	20	11	36	1.88
492577--492665	29	3.2	29	87	7	114	26	10	16	46	1.79
492773--492837	26	2.4	27	89	7	96	36	7	15	40	1.76
492739--492906	89	1.8	93	83	7	229	32	10	14	42	1.80
492819--492938	29	3.5	35	72	17	117	32	12	10	44	1.77
492788--492956	66	2.6	66	91	4	265	30	11	11	45	1.77
492788--492998	66	3.3	66	87	5	247	29	12	12	45	1.78
493057--493280	120	1.9	119	79	8	258	31	14	13	40	1.85
493178--493534	64	5.6	64	71	10	198	29	17	12	40	1.86
493685--493758	35	2.1	35	85	5	96	39	17	10	32	1.84
494111--494388	129	2.2	127	92	3	470	25	30	19	24	1.98
494268--494476	89	2.4	89	94	0	357	26	28	20	24	1.99
494357--494604	127	1.9	128	94	0	435	26	29	20	24	1.99
494151--494694	216	2.5	218	97	1	1029	26	29	20	24	1.99
494484--494694	89	2.4	89	95	0	377	27	28	20	23	1.99
494151--494736	43	13.4	43	69	16	293	26	29	19	24	1.99
494893--494935	3	15.0	3	80	9	54	32	0	0	67	0.91
494896--494935	20	2.0	20	90	5	62	32	0	0	67	0.91
495008--495055	25	1.9	25	100	0	96	37	18	16	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506461--506487	14	1.9	14	100	0	54	55	0	37	7	1.28
506660--506694	17	1.9	19	88	11	56	31	8	34	25	1.86
513897--513948	22	2.4	22	100	0	104	25	34	25	15	1.95
514015--514056	21	2.0	21	86	9	59	52	16	0	30	1.44
514703--514783	31	2.6	31	76	5	92	29	24	17	28	1.97
531844--531878	17	1.9	19	88	11	56	22	0	8	68	1.16
532083--532129	13	3.7	13	80	5	60	44	2	0	53	1.12
534181--534223	19	2.3	19	79	0	50	46	4	4	44	1.45
534326--534362	20	1.9	18	89	10	56	37	5	2	54	1.38
548189--548229	21	2.0	21	90	0	64	43	0	53	2	1.13
548186--548230	12	3.8	12	84	0	54	44	0	53	2	1.13
549207--549524	106	3.0	106	98	1	615	24	11	22	41	1.86
554518--554562	18	2.5	18	85	0	63	35	13	28	22	1.92
556831--556875	15	3.1	14	81	9	54	15	2	4	77	1.02
558250--558335	28	2.9	29	81	5	93	22	8	15	54	1.66
558251--558330	30	2.8	28	77	7	88	22	8	11	57	1.61
560390--560451	29	2.1	29	90	0	97	33	8	12	45	1.72
560849--560922	38	1.9	38	94	0	130	32	25	6	35	1.82
563470--563507	20	1.9	20	88	0	58	31	13	2	52	1.54
563497--563610	32	3.6	32	89	5	169	32	8	12	46	1.72
569709--569759	14	3.5	14	81	5	57	64	1	1	31	1.15
572792--572849	27	2.1	27	96	0	107	46	3	3	46	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573158--573233	31	2.5	31	89	2	118	39	10	18	31	1.85
573679--573933	114	2.2	113	81	4	287	44	12	23	18	1.85
575638--575694	3	19.3	3	96	3	107	68	0	0	31	0.90
575772--575830	31	1.9	30	82	3	73	52	10	11	25	1.69
582818--582850	2	16.5	2	100	0	66	51	0	0	48	1.00
582765--582902	67	2.1	67	90	2	215	42	14	5	38	1.68
582840--582968	41	3.0	43	85	7	172	39	21	6	32	1.78
582838--582968	45	3.0	44	84	10	187	39	21	6	32	1.78
588098--588444	41	8.5	41	79	7	325	31	10	19	38	1.86
588096--588411	81	3.9	82	76	10	310	31	10	19	38	1.86
589137--589175	20	1.9	21	89	5	62	12	5	38	43	1.65
589215--589288	36	2.1	36	100	0	148	28	28	10	32	1.91
589319--589378	12	5.7	12	71	28	64	25	18	36	20	1.94
589312--589426	20	5.7	20	89	2	167	26	20	33	20	1.97
589593--589650	30	2.0	29	90	10	91	44	17	5	32	1.70
589593--589652	29	2.0	30	93	6	104	43	16	6	33	1.74
589763--589802	21	1.9	21	89	0	62	52	7	10	30	1.62
590947--590994	19	2.5	20	75	3	53	31	10	6	52	1.60
597555--597594	21	1.9	22	90	10	66	12	5	40	42	1.64
597684--597758	20	3.7	20	77	7	71	28	20	30	21	1.98
597680--597758	41	1.9	41	87	5	115	26	21	29	22	1.99
597781--597868	13	6.9	13	68	25	55	23	20	34	21	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597781--597878	21	4.7	20	84	10	117	23	20	34	21	1.96
597959--598018	29	2.0	31	93	6	106	46	16	3	33	1.64
598306--598369	31	2.1	31	85	5	85	32	9	18	39	1.83
608673--608735	33	1.9	33	83	6	83	53	6	1	38	1.36
609118--609162	22	2.1	22	83	4	56	53	13	0	33	1.40
617529--617601	30	2.4	30	79	6	85	53	8	13	24	1.67
617619--617654	2	18.0	2	100	0	72	50	0	0	50	1.00
620120--620258	21	6.8	20	72	8	82	36	25	17	20	1.94
620225--620418	20	9.6	20	81	5	221	35	25	19	19	1.95
620225--620418	60	3.2	60	83	0	253	35	25	19	19	1.95
620800--620869	32	2.2	33	86	2	97	11	24	17	47	1.80
620948--621057	21	5.8	20	74	17	108	45	18	24	11	1.83
620941--621057	41	3.1	38	81	14	145	46	17	25	11	1.81
621008--621064	14	3.7	14	75	20	60	43	22	24	8	1.81
621000--621080	33	2.5	33	95	0	144	46	22	22	8	1.78
621076--621173	19	5.7	19	70	22	81	11	23	22	42	1.85
621098--621187	14	5.7	14	70	23	63	10	24	23	42	1.84
621081--621195	33	3.5	33	93	0	203	10	23	20	45	1.82
622443--622493	19	2.6	20	93	3	86	37	27	13	21	1.91
622484--622580	20	4.8	20	72	8	70	36	21	19	22	1.95
622548--622732	20	9.6	20	76	12	172	35	25	20	18	1.95
623109--623178	33	2.2	32	87	7	97	11	21	18	48	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623256--623333	41	1.9	41	97	0	147	44	16	25	12	1.83
623257--623332	21	3.7	21	83	3	109	46	17	25	11	1.82
623352--623415	19	3.7	18	72	20	64	10	23	21	43	1.84
623357--623469	32	3.5	33	85	5	160	10	24	20	44	1.83
623376--623427	14	3.4	14	72	23	50	9	25	23	42	1.84
623437--623461	12	2.1	12	100	0	50	8	24	24	44	1.80
625447--625482	13	2.6	14	86	4	56	30	0	22	47	1.52
625589--625687	19	5.5	19	84	11	145	44	17	23	15	1.86
625589--625704	52	2.2	52	95	0	205	43	17	25	14	1.87
625694--625823	19	7.7	18	65	23	77	14	23	18	43	1.87
625700--625855	33	4.7	33	96	2	287	13	23	18	44	1.85
625914--626011	19	5.4	19	84	13	143	45	17	22	14	1.84
625914--626029	52	2.2	53	96	3	218	43	18	24	13	1.86
628368--628414	24	2.0	24	87	8	69	38	21	14	25	1.92
629096--629345	20	12.5	20	85	1	259	20	17	24	38	1.93
634929--635002	38	1.9	38	94	0	130	41	14	16	27	1.87
635223--635263	16	2.6	16	88	3	57	36	12	19	31	1.89
635340--635405	23	2.9	23	93	0	105	22	18	19	39	1.92
642490--642548	19	3.0	19	80	9	57	40	11	20	27	1.87
642490--642560	21	3.5	20	74	14	74	42	9	21	26	1.84
642591--642642	20	2.6	20	100	0	104	44	15	13	26	1.84
646660--646715	26	2.2	26	90	0	85	25	30	19	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665629--665669	21	2.0	20	86	9	57	43	29	7	19	1.78
668579--668617	15	2.5	15	87	4	51	25	2	7	64	1.33
672756--672796	17	2.3	18	88	12	59	36	0	0	63	0.95
675662--675761	25	4.0	25	100	0	200	28	16	20	36	1.93
675829--675868	3	13.3	3	89	10	64	70	0	0	30	0.88
675821--675864	22	2.0	22	91	8	72	68	2	0	29	1.02
676120--676230	40	2.8	40	91	2	170	28	18	31	20	1.97
676247--676359	40	2.8	40	77	9	120	20	21	33	24	1.97
676378--676431	28	1.9	28	85	7	74	50	16	12	20	1.78
676447--676629	66	2.8	65	80	4	215	38	16	20	24	1.93

Tables:   1   2   3   4   5   6   7