genome.fa.s402.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000402.1 Hibiscus syriacus cultivar Beakdansim tig00000738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1701760

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 816 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1508387--1508541	20	7.6	20	78	4	139	39	24	19	16	1.92
1508384--1508563	21	8.8	21	79	3	143	38	23	18	19	1.93
1508407--1508501	41	2.3	41	98	0	181	37	25	18	17	1.93
1508384--1508563	62	2.9	62	91	0	272	38	23	18	19	1.93
1508384--1508570	41	4.5	42	81	4	157	38	24	18	19	1.93
1508338--1508566	103	2.2	102	85	6	295	37	21	18	22	1.94
1509305--1509367	33	1.9	33	100	0	126	46	6	3	44	1.45
1515344--1515399	25	2.2	25	90	0	85	32	7	8	51	1.60
1515372--1515444	32	2.3	32	90	0	119	27	10	10	50	1.71
1520638--1520969	184	1.8	183	80	5	409	33	12	9	44	1.74
1523258--1523288	16	1.9	16	93	0	53	41	3	0	54	1.16
1523381--1523460	40	2.0	40	85	0	106	40	20	15	25	1.90
1523381--1523446	20	3.3	20	95	0	114	39	21	16	22	1.92
1523482--1523652	20	8.6	20	78	4	121	33	22	13	30	1.92
1523481--1523674	40	4.9	39	75	10	126	34	21	12	31	1.91
1523584--1523657	19	3.7	19	82	7	85	35	22	13	28	1.92
1523584--1523674	39	2.3	41	83	11	109	35	21	12	30	1.90
1526944--1526979	18	2.0	18	94	0	63	55	22	2	19	1.56
1527399--1527448	25	2.0	25	96	0	91	26	8	22	44	1.80
1529214--1529271	29	2.0	29	86	0	80	29	17	25	27	1.97
1529378--1529528	64	2.4	64	89	1	223	52	17	1	28	1.55
1529507--1529539	13	2.4	14	95	5	59	48	21	0	30	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1530909--1531009	42	2.4	42	84	0	139	26	17	33	21	1.96
1530909--1531004	21	4.6	21	78	7	88	26	17	33	22	1.96
1531414--1531463	21	2.4	21	79	0	55	32	34	14	20	1.92
1533707--1533796	20	4.5	20	81	5	101	23	17	22	36	1.95
1533707--1533796	40	2.2	40	84	0	117	23	17	22	36	1.95
1535535--1535635	42	2.4	42	84	0	139	26	17	33	21	1.96
1535535--1535630	21	4.6	21	78	7	88	26	17	33	22	1.96
1536040--1536089	21	2.4	21	79	0	55	32	34	14	20	1.92
1538336--1538425	20	4.5	20	81	5	101	23	17	22	36	1.95
1538336--1538425	40	2.2	40	84	0	117	23	17	22	36	1.95
1540572--1540604	15	2.1	16	88	5	50	42	3	0	54	1.15
1540768--1540803	2	18.0	2	100	0	72	50	0	0	50	1.00
1546265--1546419	60	2.6	61	84	5	199	30	21	5	41	1.75
1551232--1551264	16	2.0	17	88	5	50	27	0	15	57	1.38
1552034--1552119	15	6.0	14	69	17	52	61	5	3	29	1.36
1552561--1552607	15	3.2	15	75	3	51	63	2	0	34	1.06
1552572--1552643	25	2.9	25	76	15	62	55	1	4	38	1.28
1561902--1561939	16	2.4	16	100	0	76	21	13	18	47	1.82
1562390--1562460	21	3.3	21	72	16	74	19	18	25	36	1.94
1562390--1562478	41	2.1	41	91	6	144	20	19	23	37	1.94
1563572--1563687	22	5.5	22	74	8	114	39	24	17	18	1.92
1563555--1563687	41	3.2	41	90	4	221	39	23	18	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1566411--1566450	15	2.7	15	80	0	53	67	0	5	27	1.11
1576324--1576389	23	3.0	21	91	8	82	36	7	27	28	1.84
1576334--1576389	23	2.4	23	100	0	112	37	8	26	26	1.86
1577846--1577913	23	3.0	23	84	0	91	19	26	25	29	1.98
1580906--1580949	21	2.2	20	84	12	54	25	11	4	59	1.51
1582930--1583000	20	3.5	20	69	14	56	39	14	15	30	1.87
1604044--1604116	38	1.9	38	91	0	119	19	17	31	31	1.95
1607057--1607090	17	1.9	18	88	5	52	26	17	23	32	1.97
1611402--1611443	18	2.3	18	91	0	75	16	23	4	54	1.61
1617652--1617679	13	2.2	13	100	0	56	60	7	17	14	1.55
1624965--1625007	3	15.0	3	90	9	72	34	0	0	65	0.93
1626988--1627058	30	2.2	31	78	14	72	63	1	1	33	1.12
1627015--1627065	13	3.6	13	80	15	57	60	0	1	37	1.08
1630934--1630975	2	21.0	2	100	0	84	50	0	0	50	1.00
1634863--1634938	23	3.3	23	79	0	62	36	15	17	30	1.91
1641142--1641171	16	1.9	15	93	6	51	33	3	36	26	1.73
1641421--1641486	31	2.1	31	91	0	105	22	13	13	50	1.77
1642051--1642359	6	51.5	6	100	0	618	33	0	16	49	1.46
1647726--1647780	24	2.6	20	77	22	67	63	0	0	36	0.95
1647730--1647782	23	2.3	22	90	9	88	67	0	0	32	0.91
1647730--1647794	22	3.0	22	82	8	78	63	1	0	35	1.04
1653853--1653883	11	2.8	11	95	0	53	51	25	3	19	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1655102--1655292	69	2.8	69	85	1	231	39	12	17	30	1.86
1666889--1666941	24	2.2	24	100	0	106	30	16	20	32	1.95
1668026--1668102	35	2.2	35	85	0	100	37	22	1	38	1.62
1668156--1668194	18	2.2	18	85	0	51	43	0	7	48	1.31
1668224--1668257	16	2.0	18	88	11	54	26	2	5	64	1.30
1675682--1675744	32	1.9	33	93	3	110	28	19	17	34	1.94
1685349--1685460	35	3.2	35	84	0	143	41	20	0	37	1.59
1687146--1687285	69	2.1	67	89	2	208	47	4	2	45	1.37
1690771--1690803	1	33.0	1	93	0	57	96	3	0	0	0.20
1690675--1690913	124	1.9	130	88	7	373	69	2	9	17	1.27
1690719--1691002	133	2.1	134	79	10	307	69	2	8	20	1.26
1692025--1692087	6	10.3	6	75	21	60	77	1	1	19	0.93
1692029--1692090	11	5.8	11	81	10	67	79	1	1	17	0.90
1692008--1692085	30	2.5	30	83	6	93	76	1	5	16	1.02
1692097--1692190	35	2.6	35	85	8	127	46	3	2	47	1.30
1692185--1692336	36	4.3	35	73	21	113	46	6	1	45	1.40
1692184--1692336	38	4.3	35	76	16	129	45	6	1	45	1.40
1692191--1692257	31	2.3	29	84	7	82	44	7	4	43	1.52
1692312--1692357	21	2.2	21	88	7	67	50	8	0	41	1.33
1692283--1692393	57	1.9	57	81	5	134	46	7	1	44	1.41
1692311--1692357	20	2.3	21	82	10	62	51	8	0	40	1.33
1692404--1692447	21	2.1	21	91	0	70	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1692385--1692464	33	2.4	33	80	17	94	47	5	0	47	1.24
1692242--1692441	93	2.1	93	84	7	271	45	6	1	47	1.34
1692452--1692480	2	14.5	2	100	0	58	48	0	0	51	1.00
1692765--1692820	21	2.6	22	77	8	62	48	14	16	21	1.81
1694021--1694050	15	1.9	15	93	6	51	16	13	16	53	1.73
1699266--1699299	14	2.4	14	90	0	50	52	23	0	23	1.47
1700773--1700824	27	2.1	26	86	13	74	42	1	1	53	1.23
1700975--1701042	34	2.0	34	100	0	136	55	2	14	26	1.53

Tables:   1   2   3   4   5   6   7

The End!