genome.fa.s422.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000422.1 Hibiscus syriacus cultivar Beakdansim tig00000773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2457469

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  7  of  12  ( 1325 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1355754--1355780	2	13.5	2	100	0	54	48	0	0	51	1.00
1358603--1358659	21	2.7	21	86	10	73	36	29	14	19	1.91
1365126--1365182	21	2.7	21	86	5	80	33	29	17	19	1.95
1370706--1370750	3	14.7	3	86	4	63	35	0	2	62	1.08
1370860--1370896	20	2.0	20	84	10	51	32	35	18	13	1.90
1372197--1372229	15	2.1	16	88	5	50	33	0	9	57	1.30
1377626--1377658	9	3.7	9	100	0	66	30	0	48	21	1.50
1382565--1382617	14	4.1	14	79	18	69	13	11	16	58	1.63
1382570--1382615	24	1.9	24	100	0	92	15	8	13	63	1.52
1382870--1382918	13	3.7	13	81	13	55	4	8	26	61	1.42
1383001--1383033	16	2.1	16	100	0	66	6	12	24	57	1.57
1384520--1384544	11	2.3	11	100	0	50	24	0	0	76	0.80
1384552--1384586	15	2.3	15	90	0	52	42	2	5	48	1.41
1384774--1384798	2	12.5	2	100	0	50	48	0	0	52	1.00
1387964--1388071	37	2.9	37	92	0	171	47	0	13	38	1.44
1389024--1389057	15	2.3	15	100	0	68	0	47	0	52	1.00
1389482--1389521	20	2.0	20	90	4	64	32	20	25	22	1.98
1392254--1392278	6	4.2	6	100	0	50	16	0	32	52	1.44
1395140--1395334	97	2.0	97	95	0	354	37	19	18	24	1.94
1397924--1397956	7	4.7	7	100	0	66	42	0	0	57	0.98
1400323--1400425	45	2.3	43	88	5	143	37	9	25	27	1.87
1405779--1405826	19	2.5	19	86	0	69	77	0	6	16	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1405784--1405915	59	2.2	60	76	17	143	66	0	6	26	1.20
1407251--1407337	12	6.2	13	74	21	54	57	0	3	39	1.16
1407620--1408391	106	7.3	106	92	0	1215	23	17	24	34	1.96
1419832--1419869	2	19.0	2	100	0	76	50	0	0	50	1.00
1419998--1420034	17	2.1	18	90	5	58	75	0	2	21	0.92
1421098--1421123	9	2.9	9	100	0	52	46	23	7	23	1.78
1421247--1421285	17	2.4	17	95	4	71	43	0	5	51	1.24
1421395--1421456	32	2.0	31	84	12	83	40	8	24	27	1.83
1422915--1422940	13	2.0	13	100	0	52	7	0	7	84	0.77
1423090--1423235	60	2.4	59	78	9	145	32	24	6	36	1.80
1425227--1425282	2	28.5	2	74	3	51	46	3	5	44	1.43
1426996--1427063	35	1.9	36	85	8	95	45	5	0	48	1.26
1428678--1428731	16	3.4	16	84	0	81	22	27	14	35	1.93
1429248--1429331	33	2.4	37	86	9	113	75	3	4	16	1.12
1429237--1429301	6	10.2	6	73	23	53	76	3	3	16	1.03
1430659--1430727	31	2.3	30	81	13	81	69	0	2	27	1.02
1430669--1430726	31	1.9	30	86	10	82	65	0	1	32	1.03
1430742--1431093	38	9.4	37	78	12	285	43	7	2	46	1.46
1430742--1431038	111	2.7	110	81	7	305	43	8	2	45	1.47
1430964--1431103	42	3.3	42	82	16	191	43	6	1	48	1.37
1431080--1431117	2	19.5	2	94	5	69	47	0	0	52	1.00
1431268--1431330	18	3.3	18	75	12	63	42	1	6	49	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431313--1431359	14	3.4	14	96	0	85	27	6	8	57	1.53
1431313--1431366	28	1.9	28	88	0	81	29	7	7	55	1.55
1431990--1432028	15	2.6	15	79	0	51	38	12	7	41	1.72
1432910--1432965	29	1.9	29	85	0	76	42	1	10	44	1.49
1432999--1433234	13	17.3	13	66	17	88	43	4	6	45	1.50
1432925--1433055	22	6.1	21	69	16	74	46	4	6	42	1.49
1432885--1433551	20	33.0	20	66	21	120	44	4	6	44	1.51
1433301--1433537	27	8.7	27	77	13	155	45	4	6	43	1.48
1433328--1433699	2	178.5	2	64	24	96	45	5	4	44	1.47
1433381--1433484	13	7.8	13	71	14	70	40	2	7	49	1.46
1433421--1433484	29	2.2	29	83	5	85	42	4	7	45	1.54
1433328--1433699	9	44.6	8	64	23	96	45	5	4	44	1.47
1433712--1433833	22	5.7	22	71	18	71	49	1	0	48	1.16
1433720--1433833	43	2.7	43	82	8	142	50	1	0	46	1.17
1434708--1434939	51	4.5	51	83	8	256	22	12	18	47	1.81
1434708--1434953	107	2.3	102	86	7	316	21	13	17	47	1.81
1435177--1435216	20	2.0	21	85	5	55	22	17	22	37	1.94
1440977--1441041	27	2.4	27	97	0	121	41	15	12	30	1.84
1442619--1442685	20	3.3	20	79	4	89	40	17	22	19	1.92
1442616--1442711	41	2.3	41	96	0	174	40	17	22	18	1.91
1442619--1442711	20	4.6	20	75	4	87	39	18	23	18	1.92
1442700--1442793	20	4.7	20	77	2	80	35	24	17	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1442697--1442774	41	1.9	41	83	0	102	41	21	15	21	1.90
1443004--1443063	27	2.2	27	84	3	75	45	30	5	20	1.72
1443347--1443391	19	2.4	19	92	0	72	48	26	15	8	1.74
1443387--1443571	19	10.1	19	75	14	165	12	21	22	43	1.86
1443387--1443476	39	2.3	38	94	1	153	12	20	22	45	1.83
1443459--1443546	33	2.6	33	89	1	131	11	23	25	39	1.88
1443514--1443571	20	2.9	20	80	10	64	13	24	18	43	1.87
1445570--1445692	42	2.9	42	80	2	122	22	36	17	22	1.95
1445626--1445692	21	3.2	21	66	6	55	23	35	20	19	1.95
1447049--1447084	14	2.6	14	95	0	63	30	0	25	44	1.54
1447263--1447380	19	6.7	19	66	19	76	13	23	20	42	1.88
1447267--1447360	33	2.8	33	98	0	179	12	24	19	43	1.85
1449648--1449672	12	2.1	12	100	0	50	0	28	0	72	0.86
1451150--1451186	14	2.6	14	86	0	56	48	21	0	29	1.50
1451551--1451601	20	2.5	20	96	0	93	33	21	23	21	1.97
1451631--1451703	14	4.5	15	74	22	60	13	20	19	46	1.83
1451627--1451693	18	3.8	19	83	16	92	13	22	17	46	1.83
1451810--1451846	14	2.6	14	86	0	56	48	21	0	29	1.50
1453699--1453765	19	3.5	19	83	4	89	37	23	23	14	1.93
1453754--1453811	14	3.9	14	79	16	71	48	25	17	8	1.75
1453738--1453816	32	2.4	33	95	2	142	46	24	18	10	1.80
1453823--1453916	18	5.7	18	69	23	80	11	20	23	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1453844--1453900	14	3.9	14	77	18	62	8	17	26	47	1.77
1453828--1453916	31	2.8	31	93	5	151	11	19	23	46	1.82
1453901--1453944	20	2.2	20	92	4	72	20	25	18	36	1.95
1454425--1454469	18	2.5	18	85	0	63	15	15	42	26	1.87
1456077--1456120	22	2.0	22	95	0	79	18	15	45	20	1.85
1456308--1456401	20	4.7	20	80	2	89	23	18	24	34	1.96
1456288--1456402	20	5.7	20	78	5	88	23	17	23	35	1.95
1456391--1456462	20	3.5	20	81	3	99	19	23	18	38	1.93
1460119--1460148	15	2.0	15	93	0	51	33	36	0	30	1.58
1465921--1466302	190	2.0	190	100	0	764	28	22	21	26	1.99
1469344--1469384	20	2.1	20	95	4	75	34	17	21	26	1.95
1469499--1469550	23	2.2	24	96	3	97	15	26	23	34	1.94
1469523--1470093	105	5.5	105	97	0	1058	22	17	25	34	1.96
1470890--1470946	7	8.1	7	87	12	82	1	12	0	85	0.66
1479996--1480041	16	2.8	16	87	9	58	78	4	4	13	1.05
1482825--1482867	12	3.7	12	84	9	54	58	0	0	41	0.98
1485292--1485343	18	2.8	18	78	18	54	30	7	0	61	1.24
1485334--1485360	14	1.9	14	100	0	54	29	0	0	70	0.88
1490995--1491034	20	2.0	21	95	5	73	30	22	20	27	1.98
1497025--1497098	19	4.0	18	84	5	85	44	8	14	32	1.75
1497220--1497302	39	2.1	39	86	0	112	26	7	16	49	1.72
1501207--1501324	31	3.8	31	88	4	157	18	16	9	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1501207--1501324	63	1.9	62	84	5	157	18	16	9	55	1.68
1504621--1504660	20	2.1	19	90	4	62	35	22	0	42	1.54
1504786--1505118	111	3.0	111	95	0	587	36	7	11	45	1.68
1510612--1510648	12	3.2	12	77	14	51	32	5	51	10	1.60
1510811--1510922	51	2.2	51	79	3	118	22	27	34	15	1.94
1525823--1525856	15	2.3	15	100	0	68	38	23	0	38	1.55
1528032--1528523	42	11.9	42	80	6	379	29	21	18	30	1.97
1528032--1528523	248	2.0	247	82	4	605	29	21	18	30	1.97
1528280--1528763	164	2.9	163	83	1	563	29	19	18	32	1.95
1528024--1528743	42	17.4	41	76	7	264	29	20	18	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12