genome.fa.s572.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000572.1 Hibiscus syriacus cultivar Beakdansim tig00001120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2399138

Tables:   1   2   3   4   5   6   7   8   9   

This is table  2  of  9  ( 1076 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321820--323560	867	2.0	873	98	1	3392	27	16	17	37	1.91
325198--325272	35	2.2	34	87	2	105	38	21	1	38	1.62
325663--325902	127	1.9	128	88	4	369	36	13	12	36	1.84
327222--327249	7	4.0	7	100	0	56	42	0	57	0	0.99
331736--331891	74	2.1	74	93	3	269	29	19	23	26	1.98
333318--333469	67	2.2	68	91	1	243	29	27	27	15	1.96
333473--333504	13	2.5	13	95	5	57	78	0	21	0	0.76
334076--334120	23	2.0	23	86	0	63	20	24	28	26	1.99
340116--340158	21	2.0	21	81	0	50	30	30	25	13	1.94
340138--340287	67	2.2	67	91	2	239	30	28	27	14	1.95
340898--340942	23	2.0	23	86	0	63	20	24	28	26	1.99
348798--349209	105	3.9	104	84	4	445	29	25	12	31	1.93
348798--349210	210	2.0	210	81	4	494	29	25	12	31	1.93
351022--351139	35	3.3	36	86	4	168	44	18	3	33	1.66
351072--351132	21	3.2	21	63	29	55	42	19	3	34	1.68
354782--354820	19	2.1	19	95	0	69	20	38	15	25	1.92
354768--354945	65	2.8	65	82	2	207	28	26	17	26	1.98
360696--360797	44	2.3	44	80	8	118	28	23	19	28	1.98
361487--361566	31	2.6	31	91	0	124	31	2	35	31	1.71
361933--362002	19	3.7	19	90	5	108	22	35	15	25	1.94
361966--362110	64	2.2	66	85	6	199	29	25	16	28	1.97
363967--364114	35	4.2	36	88	8	214	43	17	5	33	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368497--368540	22	2.0	23	82	13	56	54	4	4	36	1.41
368648--368672	13	1.9	13	100	0	50	40	16	20	24	1.91
369401--369446	18	2.6	18	89	0	65	52	17	19	10	1.74
369615--369671	30	1.9	30	85	7	80	75	3	14	7	1.14
370286--370336	2	25.5	2	100	0	102	49	0	0	50	1.00
371354--371703	105	3.3	105	86	2	479	28	24	13	33	1.93
372851--372877	5	5.4	5	100	0	54	59	0	0	40	0.98
377552--377592	20	2.1	19	86	4	55	43	2	2	51	1.28
388025--388055	9	3.3	9	95	4	53	25	0	0	74	0.82
395415--395502	28	3.1	29	77	8	99	68	9	6	15	1.38
396995--397163	91	1.8	93	91	2	279	24	24	26	24	2.00
397270--397505	40	5.6	41	71	14	133	24	18	32	24	1.97
397083--397500	130	3.2	130	85	4	518	24	19	30	25	1.98
397532--397601	28	2.5	28	83	4	79	47	14	14	24	1.81
397914--397987	29	2.6	28	78	4	85	44	10	13	31	1.78
398296--398362	30	2.3	30	76	2	73	47	10	8	32	1.69
398335--398493	64	2.5	64	87	3	234	42	14	13	30	1.84
398450--398543	50	1.9	48	85	8	127	42	14	11	30	1.82
398720--399148	116	3.9	105	81	11	461	37	9	16	35	1.82
398817--399138	116	2.8	114	93	5	553	37	10	16	35	1.83
399113--399210	36	2.7	36	84	3	117	33	12	18	35	1.88
405006--405081	15	5.2	15	70	17	61	64	9	7	18	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404998--405081	30	2.9	29	78	5	98	66	9	7	16	1.42
423899--424056	21	7.8	20	71	9	88	38	25	16	19	1.92
423959--424075	20	5.7	20	75	12	78	38	23	17	20	1.93
424062--424212	20	7.6	19	78	8	149	39	23	16	19	1.92
424023--424212	40	4.8	40	90	2	267	41	24	16	18	1.90
424043--424212	60	2.8	60	86	3	209	40	24	16	18	1.90
424874--424927	23	2.3	24	83	3	65	27	14	18	38	1.90
425112--425136	12	2.1	12	100	0	50	72	0	28	0	0.86
427406--427617	33	6.2	34	82	13	235	46	18	22	13	1.83
427420--427635	19	12.4	19	76	19	240	46	18	21	13	1.83
427448--427657	52	4.0	52	98	1	404	45	17	23	13	1.84
427473--427654	19	10.8	15	76	19	66	45	18	23	13	1.84
427664--427779	53	2.2	53	98	1	225	13	24	18	43	1.86
427682--427779	19	5.4	19	84	13	143	14	22	17	45	1.84
427886--427922	14	2.6	14	91	0	65	45	21	0	32	1.52
429879--429971	33	2.8	33	93	0	159	48	21	20	9	1.78
429901--429954	14	3.5	14	75	22	54	44	24	22	9	1.81
429842--429976	19	7.6	19	75	16	119	46	23	19	10	1.80
429972--430100	19	7.3	19	75	17	125	8	17	28	45	1.77
429972--430063	33	2.8	33	93	3	150	7	18	28	45	1.76
430148--430987	93	9.1	93	98	0	1612	45	19	12	22	1.84
430148--430987	278	3.0	278	98	0	1601	45	19	12	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432681--432795	33	3.5	33	96	0	212	46	20	23	9	1.79
432703--432800	19	5.7	19	70	22	81	44	21	23	10	1.82
432689--432778	14	5.7	14	69	23	63	44	22	24	8	1.81
432812--432868	14	3.7	14	75	20	60	8	24	22	43	1.81
432796--432876	33	2.5	33	95	0	144	8	22	22	46	1.78
432853--432928	21	3.7	21	82	3	100	11	23	17	47	1.80
432852--432929	41	1.9	41	94	0	138	12	24	16	46	1.82
433008--433078	33	2.2	33	92	0	115	47	18	22	11	1.80
433259--433313	22	2.5	22	81	0	74	20	16	40	23	1.91
433460--433633	20	8.6	20	79	6	181	18	19	25	36	1.95
433620--433702	21	4.0	21	70	6	69	24	16	24	34	1.95
442482--442566	37	2.3	37	85	2	109	37	11	15	35	1.84
443127--443155	11	2.5	12	94	5	51	44	20	20	13	1.85
446194--446238	18	2.5	18	85	7	56	40	0	0	60	0.97
480425--480488	20	3.0	21	70	17	69	25	17	25	32	1.96
480406--480502	42	2.3	42	90	0	149	25	19	23	30	1.98
480403--480482	20	3.9	19	72	13	61	25	21	23	30	1.99
480461--480870	80	5.1	80	93	1	689	33	17	20	29	1.95
480461--480870	159	2.6	160	94	0	714	33	17	20	29	1.95
480873--481001	42	3.1	41	83	5	152	27	17	20	34	1.96
480883--480953	22	3.3	22	66	15	58	25	16	21	36	1.94
481427--481733	53	5.8	53	91	1	463	30	21	26	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488048--488115	31	2.2	31	89	0	100	42	5	10	41	1.63
494781--494806	5	5.2	5	100	0	52	23	57	19	0	1.40
500407--500441	14	2.5	14	100	0	70	14	8	37	40	1.76
509621--509656	14	2.6	14	100	0	72	22	38	5	33	1.77
522047--522124	25	3.1	25	67	17	70	43	7	15	33	1.75
522045--522151	51	2.1	51	94	0	187	42	8	14	35	1.75
528183--528207	2	12.5	2	100	0	50	52	0	0	48	1.00
543099--543167	30	2.3	31	82	2	95	44	14	7	33	1.73
553210--553269	21	3.2	21	60	30	53	31	1	20	46	1.60
553209--553318	35	3.1	35	85	5	150	33	1	18	46	1.60
557804--557864	21	3.2	21	65	29	64	31	4	21	42	1.74
557803--557915	35	3.2	36	91	5	176	31	4	20	43	1.71
561835--561872	17	2.3	17	86	4	51	28	0	0	71	0.87
562236--562612	6	62.8	6	98	0	727	50	16	0	32	1.46
566017--566073	21	2.7	21	84	10	73	21	12	31	35	1.90
566017--566087	21	3.4	20	80	3	70	19	16	30	32	1.95
566366--566461	21	4.6	20	80	12	104	21	32	21	23	1.98
566364--566461	42	2.3	42	87	3	135	21	32	21	24	1.98
568000--568035	14	2.6	15	83	16	51	5	19	27	47	1.72
568393--568428	18	2.0	18	100	0	72	16	5	22	55	1.62
571686--571740	20	2.7	20	85	2	74	27	10	27	34	1.90
573241--573283	20	2.2	20	91	0	68	32	11	20	34	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585675--585742	34	2.0	34	100	0	136	17	17	8	55	1.66
586637--586683	3	15.7	3	100	0	94	31	0	0	68	0.90
598588--598617	5	6.0	5	100	0	60	0	20	0	80	0.72
606058--606083	3	8.7	3	100	0	52	69	30	0	0	0.89
606297--606335	14	2.8	14	84	0	51	35	28	12	23	1.91
608897--608981	27	3.5	25	80	13	97	37	15	16	30	1.90
609155--609217	31	2.0	32	82	14	78	57	1	12	28	1.45
611424--611496	37	2.0	37	89	2	112	34	16	12	36	1.86
614373--614429	17	3.5	16	79	9	62	47	1	0	50	1.11
616178--616215	19	2.0	19	89	0	58	52	2	0	44	1.14

Tables:   1   2   3   4   5   6   7   8   9