genome.fa.s572.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000572.1 Hibiscus syriacus cultivar Beakdansim tig00001120_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2399138

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1076 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618589--618627	21	1.9	19	85	10	51	66	2	0	30	1.05
624965--625010	6	7.5	6	82	2	56	45	36	13	4	1.63
625419--625448	3	10.0	3	100	0	60	66	33	0	0	0.92
625662--625700	14	2.8	14	84	0	51	35	28	12	23	1.91
639629--639664	18	2.0	18	100	0	72	27	22	5	44	1.75
645115--645222	45	2.4	46	85	4	139	31	19	19	29	1.96
649202--649254	23	2.3	23	93	0	88	22	24	28	24	2.00
649202--649275	23	3.3	23	81	7	73	25	24	25	24	2.00
651329--651367	12	3.4	12	82	13	55	17	23	23	35	1.95
678298--678356	12	5.2	12	74	15	54	3	23	0	72	0.99
678476--678507	16	2.0	16	100	0	64	31	25	12	31	1.92
683884--683934	25	2.1	25	89	10	79	33	0	11	54	1.37
689713--689773	30	2.1	30	96	3	115	39	13	9	37	1.77
693329--693363	18	2.1	18	89	10	56	48	2	0	48	1.16
693481--693513	13	2.6	13	90	4	50	15	3	0	81	0.80
703863--703891	2	14.5	2	100	0	58	0	48	0	51	1.00
703891--703925	2	17.5	2	100	0	70	48	0	0	51	1.00
706409--706466	29	2.0	29	89	0	89	13	36	27	22	1.92
706512--706549	13	2.8	14	92	4	60	28	39	23	7	1.83
706624--706680	29	2.0	29	96	0	105	21	31	36	10	1.87
708223--708267	23	2.0	23	82	8	56	28	26	24	20	1.99
708235--708550	150	2.1	149	93	1	535	35	21	16	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718290--718326	2	19.0	2	94	5	67	51	0	0	48	1.00
721905--721943	18	2.1	19	85	4	53	51	0	2	46	1.14
722889--722943	24	2.3	24	90	6	85	54	30	1	12	1.48
726828--726892	2	34.0	2	84	9	91	50	1	0	47	1.10
727247--727389	22	6.9	21	65	15	64	32	2	2	62	1.21
727350--727405	8	7.2	8	75	20	57	23	1	1	73	1.03
727352--727397	22	2.1	21	92	4	74	23	2	2	71	1.08
728572--728612	19	2.0	21	90	9	68	63	0	0	36	0.95
729332--729370	12	3.4	11	82	10	51	61	2	0	35	1.10
735328--735504	91	1.9	91	93	6	306	18	19	33	29	1.95
735748--735881	20	6.7	20	70	11	69	35	26	17	21	1.95
735849--736040	59	3.2	59	81	0	231	34	25	19	19	1.96
735849--736039	20	9.6	20	78	8	194	34	25	19	19	1.96
735889--736037	39	3.8	39	81	10	178	32	25	20	22	1.98
736409--736478	32	2.2	31	90	7	106	11	21	20	47	1.81
736558--736661	21	5.6	20	70	20	91	45	19	24	11	1.83
736551--736672	33	3.4	36	85	10	153	45	18	25	10	1.82
736616--736672	14	3.7	14	75	20	60	43	22	24	8	1.81
736570--736688	33	3.4	33	88	6	148	46	21	22	10	1.81
736684--736781	19	5.7	19	70	22	90	11	22	22	43	1.84
736706--736795	14	5.7	14	69	23	63	10	23	23	43	1.83
736689--736802	33	3.5	33	93	1	203	10	22	21	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738475--738754	92	3.1	93	95	2	514	22	12	19	45	1.84
738801--738929	19	7.3	19	71	17	107	45	27	17	10	1.80
738837--738929	33	2.8	32	88	4	132	46	25	18	9	1.79
738801--738929	52	2.5	51	71	18	129	45	27	17	10	1.80
738925--739059	19	7.6	19	75	16	128	11	19	23	45	1.82
738947--739003	14	3.7	14	77	20	60	10	21	22	45	1.82
738930--739022	33	2.8	33	95	0	168	10	20	21	47	1.80
740972--741007	14	2.6	14	95	0	63	33	0	22	44	1.53
741114--741210	19	5.4	19	82	15	134	45	17	22	14	1.85
741114--741228	51	2.2	53	96	3	216	43	18	24	13	1.86
741235--741537	33	8.9	33	75	15	167	13	22	18	45	1.84
741257--741523	19	15.4	19	76	18	264	13	21	18	46	1.83
741235--741495	52	5.0	52	85	6	377	13	22	17	45	1.83
741362--741418	14	3.7	14	75	20	60	10	24	21	43	1.83
743808--743832	12	2.1	12	100	0	50	0	28	0	72	0.86
744003--744049	24	2.0	24	87	8	69	38	21	14	25	1.92
744730--744959	20	11.5	20	85	1	228	20	18	24	36	1.94
744946--745028	21	4.0	21	73	6	78	25	16	24	33	1.96
744926--745024	42	2.4	43	77	11	100	21	18	23	37	1.94
745286--745603	40	7.9	40	82	2	323	30	16	14	38	1.88
745281--745603	81	4.0	81	79	4	321	30	16	15	38	1.89
745286--745603	121	2.6	121	85	1	397	30	16	14	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749281--749338	30	1.9	30	85	0	80	32	22	20	24	1.98
749611--749639	12	2.3	13	94	5	51	51	13	0	34	1.42
751639--751916	42	6.6	42	78	2	279	26	21	17	34	1.96
751639--751916	85	3.3	84	79	3	299	26	21	17	34	1.96
751639--751915	127	2.2	126	83	3	324	26	20	18	34	1.96
754875--754964	2	47.0	2	91	8	152	50	0	0	50	1.00
757748--757820	29	2.5	29	84	8	94	38	0	13	47	1.43
757776--757832	21	2.7	22	76	15	57	38	0	15	45	1.47
762700--762773	29	2.4	30	80	8	87	28	32	24	14	1.95
762654--762773	61	2.0	61	82	12	149	26	30	25	17	1.97
763630--763668	13	3.0	13	92	0	69	23	28	30	17	1.97
763658--763695	17	2.2	17	100	0	76	10	23	47	18	1.79
763626--763668	7	6.4	7	84	10	63	23	27	30	18	1.98
763665--763717	22	2.4	22	96	0	97	9	22	49	18	1.76
763688--763720	17	1.9	17	100	0	66	15	24	42	18	1.88
763714--763785	19	3.8	19	92	5	119	25	31	26	16	1.96
763714--763802	9	9.3	9	76	11	79	26	29	25	17	1.98
763714--763803	38	2.3	39	86	5	121	26	28	25	18	1.98
769961--770082	63	1.9	63	80	6	140	26	29	26	18	1.98
770955--770980	13	2.0	13	100	0	52	23	30	30	15	1.95
770970--771010	17	2.4	17	100	0	82	14	24	43	17	1.86
770951--770980	7	4.4	7	91	8	53	23	30	30	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771006--771074	9	7.1	10	77	11	72	27	28	23	20	1.99
771004--771074	19	3.7	20	86	5	92	26	28	25	19	1.99
773313--773344	2	16.0	2	93	0	55	46	0	0	53	1.00
773736--774409	334	2.0	338	90	2	1063	44	5	7	43	1.54
774499--774554	21	2.7	21	83	10	71	25	5	3	66	1.29
789465--789501	19	1.9	19	88	0	56	32	27	16	24	1.96
789587--789659	20	3.7	20	94	0	119	42	17	17	21	1.89
789648--789814	20	8.3	20	85	4	201	27	28	21	22	1.99
789628--789814	60	3.1	60	78	8	182	28	27	21	22	1.99
790629--790675	24	2.0	24	95	0	85	27	21	17	34	1.95
793131--793373	20	12.9	20	78	11	226	34	20	20	23	1.97
793134--793333	54	3.6	54	85	6	242	35	22	20	22	1.96
793173--793378	39	5.4	39	78	8	208	35	21	20	22	1.96
793134--793373	59	4.2	57	86	3	217	34	21	20	23	1.97
793508--793587	30	2.4	34	76	20	96	56	13	2	27	1.51
793523--793588	30	2.2	30	94	0	114	56	12	1	30	1.45
794963--795070	21	5.1	21	76	4	101	25	18	36	20	1.95
794961--795070	42	2.6	42	81	2	132	24	18	37	20	1.94
795547--795590	20	2.2	20	100	0	88	52	18	11	18	1.74
795586--795663	20	4.2	20	71	18	71	38	23	20	17	1.93
795589--795663	19	4.2	19	72	19	79	38	22	20	18	1.93
795631--795673	19	2.3	19	84	8	52	37	27	18	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
795669--795828	20	8.6	20	75	15	146	18	21	23	36	1.95
795669--795828	74	2.2	74	97	0	302	18	21	23	36	1.95
797813--797868	20	2.8	20	86	0	76	51	21	14	12	1.74
797856--797936	33	2.4	34	89	4	128	35	23	22	18	1.95
798258--798330	22	3.3	22	88	0	110	21	15	42	20	1.89
798500--798585	20	4.2	20	78	8	93	23	19	26	30	1.98
798532--798606	21	3.6	21	75	10	82	18	22	26	32	1.97
798516--798606	41	2.2	41	94	0	155	19	21	27	30	1.98
798595--798647	20	2.7	20	84	0	79	18	20	18	41	1.91
811990--812022	17	2.0	17	88	5	50	36	15	3	45	1.61

Tables:   1   2   3   4   5   6   7   8   9