genome.fa.s5983.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005983.1 Hibiscus syriacus cultivar Beakdansim tig00014064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  781742

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6922--6947	11	2.4	11	100	0	52	7	65	19	7	1.43
12572--12608	2	18.5	2	94	0	65	48	0	2	48	1.15
23671--23806	21	6.6	21	70	6	73	36	25	17	20	1.95
23814--23948	20	6.7	20	83	5	182	33	28	18	20	1.96
23776--23948	40	4.3	39	78	7	159	36	27	17	17	1.93
23776--23947	20	8.6	20	81	5	141	36	27	17	18	1.93
24446--24522	21	3.7	21	81	6	102	48	16	22	12	1.80
24507--24563	14	3.7	14	75	20	60	43	22	24	8	1.81
24500--24579	33	2.4	33	95	0	142	47	22	21	8	1.78
24605--24669	21	3.1	21	77	4	87	12	26	13	47	1.78
24604--24667	20	3.2	20	77	4	83	14	25	14	46	1.81
26354--26576	93	2.4	93	97	0	419	22	14	18	44	1.86
26706--26764	19	3.4	19	77	22	83	47	30	15	6	1.71
26674--26764	33	2.7	33	91	1	137	47	28	16	7	1.74
26690--26748	14	3.9	14	74	20	55	47	27	18	6	1.74
26760--26894	19	7.6	19	69	16	92	11	20	22	45	1.84
26782--26838	14	3.7	14	75	20	51	10	22	22	43	1.84
26765--26860	33	2.9	33	88	0	147	9	21	21	46	1.79
30188--30234	24	2.0	24	83	8	60	40	21	12	25	1.89
30927--31077	20	7.6	20	83	7	157	21	16	25	36	1.94
30927--31118	40	4.8	40	81	9	176	19	16	25	38	1.92
30927--31096	60	2.9	58	80	8	157	20	16	25	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31064--31136	20	3.6	20	82	10	103	10	17	27	43	1.83
31124--31239	21	5.6	21	65	14	53	20	18	27	33	1.96
31069--31155	41	2.1	41	82	4	104	17	17	26	39	1.91
36919--36946	2	14.0	2	100	0	56	50	0	0	50	1.00
39366--39431	27	2.5	26	85	7	87	34	1	19	43	1.60
39675--39714	17	2.2	19	86	8	57	47	10	17	25	1.78
42166--42358	84	2.3	84	98	1	370	43	4	11	40	1.61
59306--59339	14	2.4	14	90	9	52	76	0	8	14	1.01
59513--59538	11	2.4	11	100	0	52	73	0	0	26	0.84
70274--70309	5	7.2	5	96	0	54	66	0	0	33	0.92
70252--70309	15	3.8	15	77	18	57	67	1	1	29	1.11
71155--71210	22	2.5	22	100	0	112	53	16	12	17	1.73
77317--77369	23	2.2	24	81	12	65	35	0	0	64	0.94
77321--77371	19	2.7	18	82	11	57	39	0	0	60	0.97
78248--78335	6	15.0	6	74	9	56	21	3	27	47	1.66
78263--78354	40	2.2	41	81	7	98	20	5	28	45	1.73
80380--80410	2	15.5	2	100	0	62	48	0	0	51	1.00
80996--81080	34	2.5	33	90	7	136	38	1	0	60	1.05
81070--81121	25	2.0	27	88	7	81	17	5	32	44	1.72
87887--87930	12	3.6	12	80	17	54	22	4	0	72	1.02
88369--88932	218	2.6	214	84	7	697	35	20	15	28	1.93
103444--103470	12	2.2	12	100	0	54	51	0	14	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103239--103666	217	2.0	216	94	2	761	35	9	17	36	1.83
107857--107885	2	15.0	2	92	7	51	48	0	0	51	1.00
107996--108026	14	2.2	14	94	0	53	51	0	3	45	1.17
109187--109245	29	2.1	29	87	3	84	42	11	0	45	1.41
109185--109366	60	3.0	60	75	8	163	36	20	4	39	1.73
116487--116787	150	2.0	150	95	4	545	32	13	14	39	1.85
124986--125025	18	2.2	18	86	0	53	52	25	12	10	1.70
134909--134961	27	2.0	27	92	0	88	54	22	9	13	1.67
135781--135830	24	2.0	25	96	3	93	24	8	4	64	1.38
170324--170423	42	2.5	42	82	14	113	43	2	1	54	1.18
172602--172670	17	4.1	17	96	0	120	20	23	26	30	1.98
173202--173237	2	18.0	2	100	0	72	50	0	0	50	1.00
173293--173317	2	12.5	2	100	0	50	48	0	0	52	1.00
174087--174198	35	3.2	35	85	0	143	41	21	0	35	1.59
174194--174268	35	2.1	35	85	4	98	36	0	20	44	1.52
183758--183889	28	4.4	30	93	6	177	62	11	8	18	1.53
183793--183889	28	3.5	28	100	0	194	63	10	7	18	1.48
187680--187788	29	3.8	29	90	0	182	19	33	23	22	1.97
187658--187785	58	2.2	58	98	0	247	19	32	24	23	1.97
199064--200046	495	2.0	487	97	2	1878	32	19	22	25	1.97
208081--208211	60	2.2	59	84	4	165	43	7	18	30	1.78
219113--219174	29	2.1	29	87	0	88	62	0	1	35	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
219131--219174	22	2.0	23	81	4	54	63	0	2	34	1.07
228990--229015	5	5.2	5	100	0	52	76	23	0	0	0.78
235835--235884	24	2.1	24	84	0	64	30	52	12	6	1.62
235848--235894	24	2.0	24	91	0	76	21	53	12	12	1.72
236388--236420	2	16.5	2	100	0	66	48	0	0	51	1.00
238993--239026	16	2.1	16	100	0	68	41	17	11	29	1.85
238993--239036	16	2.8	16	89	6	54	47	15	11	25	1.79
239056--239117	27	2.2	27	75	13	63	48	0	6	45	1.28
239009--239258	127	2.0	127	96	0	464	42	4	8	44	1.53
239234--239271	19	2.0	20	89	5	60	23	0	2	73	0.95
241365--241520	77	2.0	77	96	0	285	19	14	28	37	1.91
243781--243833	26	2.0	27	88	3	81	49	7	16	26	1.73
247856--248015	79	2.0	79	95	0	284	46	6	23	22	1.75
255011--255060	26	1.9	26	100	0	100	32	26	8	34	1.85
258370--258402	2	16.5	2	100	0	66	48	0	0	51	1.00
260198--260259	30	2.1	30	87	0	88	35	16	8	40	1.78
260537--260605	32	2.2	32	89	0	102	37	4	15	42	1.68
284403--284464	27	2.4	25	82	12	72	58	3	1	37	1.24
286927--286975	24	2.0	24	88	0	71	32	20	20	26	1.97
286932--286987	26	2.2	26	81	9	62	33	23	19	23	1.97
286931--286983	27	2.0	27	85	3	72	32	22	20	24	1.98
288676--288700	12	2.1	12	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
288726--288790	33	2.0	33	93	0	112	40	9	7	43	1.65
288723--288801	33	2.4	33	86	0	104	39	11	10	39	1.75
289551--289603	19	2.8	19	91	0	88	22	26	16	33	1.96
289616--289733	20	5.8	20	72	4	92	17	20	22	39	1.92
289637--289710	21	3.6	21	75	3	87	21	18	25	33	1.96
289617--289730	41	2.8	41	94	0	192	18	21	22	37	1.94
289866--289898	6	5.7	6	96	3	59	30	51	18	0	1.46
290754--290779	2	13.0	2	100	0	52	50	0	0	50	1.00
295447--295570	61	2.0	61	100	0	248	42	12	4	39	1.65
311692--311768	26	3.0	26	79	7	84	53	6	2	37	1.41
311726--311768	12	3.4	12	78	12	50	53	6	0	39	1.28
315687--315738	21	2.4	22	90	6	88	44	13	21	21	1.86
321842--321890	20	2.4	21	76	10	66	57	6	16	20	1.60
325121--325163	21	2.0	20	82	8	50	30	6	9	53	1.59
325443--325503	31	2.0	31	93	0	104	32	16	26	24	1.96
329022--329059	19	2.0	20	84	5	51	52	7	7	31	1.59
334586--334630	22	1.9	23	86	13	65	33	6	20	40	1.78
336186--336219	2	17.0	2	100	0	68	50	0	0	50	1.00
344103--344131	15	2.0	15	93	6	51	24	13	41	20	1.89
346769--346805	2	18.5	2	100	0	74	48	0	0	51	1.00
351399--351451	24	2.2	24	100	0	106	11	13	30	45	1.78
352071--352408	162	2.1	162	98	0	651	32	10	18	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355860--355972	57	2.0	58	87	1	165	49	5	14	30	1.65
357082--357112	16	1.9	16	93	0	53	67	0	0	32	0.91
363981--364018	19	2.0	19	89	0	58	28	18	28	23	1.98
370747--370786	21	1.9	21	85	10	55	35	10	2	52	1.48
371239--371264	6	4.3	6	100	0	52	0	46	0	53	1.00
372666--372693	8	3.5	8	100	0	56	10	21	42	25	1.85
372726--372763	19	2.0	19	89	0	58	28	18	28	23	1.98
372745--372905	65	2.5	65	86	7	204	26	18	24	31	1.97
372746--372955	65	3.3	63	77	12	194	25	18	24	31	1.97
383930--384062	65	2.0	65	98	0	257	39	6	4	48	1.50

Tables:   1   2   3   4   5