genome.fa.s5983.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005983.1 Hibiscus syriacus cultivar Beakdansim tig00014064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  781742

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386600--386647	19	2.5	19	93	0	78	33	25	18	22	1.97
386675--386722	21	2.3	21	85	0	60	31	25	18	25	1.98
386695--386919	41	5.3	39	75	14	164	35	17	21	26	1.95
386716--386828	20	5.6	20	83	10	149	38	17	19	24	1.93
386818--386962	21	6.6	21	73	20	91	26	18	26	28	1.98
386803--386943	41	3.0	50	73	18	174	30	16	25	27	1.96
386853--386919	20	3.3	20	73	19	66	34	16	22	26	1.95
386762--386943	91	2.0	91	96	0	337	31	17	24	26	1.97
388779--388820	22	2.0	21	85	4	57	42	2	2	52	1.27
414272--414627	177	2.0	178	98	0	696	32	16	26	24	1.96
446708--446766	22	2.6	22	78	2	73	49	5	5	40	1.47
447051--447112	23	2.7	22	80	9	63	58	6	16	19	1.59
448387--448420	17	2.0	17	100	0	68	41	5	17	35	1.74
448559--448596	6	6.5	6	90	3	60	2	15	50	31	1.58
448709--448761	22	2.4	22	96	0	97	33	28	18	18	1.95
448754--448813	21	2.9	21	75	2	59	36	25	20	18	1.94
450320--450356	3	12.3	3	100	0	74	67	0	0	32	0.91
454475--454577	37	2.7	38	86	3	145	48	5	2	42	1.42
464852--465172	43	7.5	43	89	4	463	31	24	27	16	1.97
464839--465172	128	2.6	127	89	2	508	31	25	26	17	1.97
464858--465172	171	1.8	171	90	1	506	30	25	26	17	1.97
467987--468045	18	3.3	18	80	4	75	15	15	49	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
469950--470283	43	7.8	43	89	5	464	30	24	26	17	1.97
469950--470283	85	3.9	87	87	5	466	30	24	26	17	1.97
469950--470279	128	2.6	128	89	3	495	30	25	26	17	1.97
473480--473527	20	2.4	20	89	0	69	35	18	27	18	1.95
486924--486998	38	2.0	38	91	0	123	29	16	25	29	1.96
487160--487342	91	2.0	91	98	0	357	27	20	14	37	1.91
490087--490148	22	2.7	24	75	7	58	59	1	1	37	1.17
491549--491575	13	2.1	13	100	0	54	14	0	0	85	0.61
492393--492637	119	2.0	119	98	1	472	31	26	17	24	1.97
495819--495885	30	2.2	31	81	7	84	16	25	22	35	1.94
496793--496861	22	3.0	22	85	4	75	47	1	0	50	1.09
498457--498572	51	2.3	51	83	4	135	36	5	8	50	1.56
499947--500034	44	2.0	44	100	0	176	31	13	15	38	1.87
503961--504015	29	1.9	28	89	10	85	40	0	3	56	1.17
510433--510477	21	2.1	21	87	0	63	33	26	22	17	1.96
511653--511813	64	2.5	65	86	7	204	33	18	21	26	1.96
512131--512165	18	1.9	18	88	0	52	31	5	17	45	1.71
513581--513626	23	2.0	23	86	0	65	23	23	23	28	2.00
513152--513603	149	3.0	149	98	0	872	27	15	21	35	1.93
515351--515571	103	2.1	103	94	1	381	27	14	23	35	1.93
515587--515647	23	2.7	23	92	0	95	19	27	26	26	1.99
515676--515709	17	2.1	17	88	5	52	32	23	5	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520339--520551	103	2.1	103	93	0	372	25	12	23	37	1.91
520568--520630	23	2.7	23	92	0	99	19	28	26	25	1.98
520664--520697	17	2.1	17	88	5	52	32	23	5	38	1.79
524735--524809	35	2.1	35	92	0	123	33	29	28	9	1.88
524891--524976	23	3.7	23	81	3	109	38	19	15	26	1.91
526121--526156	18	2.0	18	88	0	54	30	16	0	52	1.44
527491--527559	13	4.9	13	81	16	84	15	21	46	15	1.84
527491--527549	31	1.9	31	100	0	118	13	22	47	16	1.82
527496--527537	18	2.3	18	100	0	84	9	23	50	16	1.75
527499--527567	31	2.2	29	82	14	77	14	20	47	17	1.82
529537--529611	35	2.1	35	92	0	123	33	29	28	9	1.88
529693--529778	23	3.7	23	81	3	109	38	19	15	26	1.91
530923--530958	18	2.0	18	88	0	54	30	16	0	52	1.44
532270--532316	15	3.3	15	85	5	62	23	25	36	14	1.93
532293--532361	13	4.9	13	81	16	84	15	21	46	15	1.84
532293--532351	31	1.9	31	100	0	118	13	22	47	16	1.82
532298--532339	18	2.3	18	100	0	84	9	23	50	16	1.75
532301--532369	31	2.2	29	82	14	77	14	20	47	17	1.82
535045--535088	23	1.9	23	85	0	61	63	0	4	31	1.14
538477--538507	7	4.4	7	100	0	62	25	29	29	16	1.96
538504--538561	5	10.8	5	78	14	62	6	22	51	18	1.70
538497--538561	22	3.0	22	100	0	130	9	23	49	18	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538558--538636	19	4.2	18	78	16	88	27	29	29	13	1.95
538583--538657	29	2.5	31	89	8	120	29	26	26	17	1.97
538558--538656	9	10.3	9	80	10	90	29	27	28	15	1.96
545817--545847	7	4.4	7	100	0	62	25	29	29	16	1.96
545844--545901	5	10.8	5	78	14	62	6	22	51	18	1.70
545837--545901	22	3.0	22	100	0	130	9	23	49	18	1.76
545898--545976	19	4.2	18	78	16	88	27	29	29	13	1.95
545923--545997	29	2.5	31	89	8	120	29	26	26	17	1.97
545898--545996	9	10.3	9	80	10	90	29	27	28	15	1.96
547060--547120	32	1.9	32	86	0	86	11	26	24	37	1.89
547261--547305	22	2.0	22	83	8	56	44	4	0	51	1.21
554184--554218	18	1.9	18	88	0	52	25	31	20	22	1.98
558459--558498	12	3.6	12	80	12	50	45	2	0	52	1.14
558485--558541	22	2.6	22	91	0	87	40	0	5	54	1.23
558565--558623	31	1.9	31	89	0	91	44	8	3	44	1.51
566323--566406	19	4.5	19	74	14	68	34	4	2	58	1.32
566386--566422	13	2.7	14	84	15	51	37	2	0	59	1.12
569351--569427	22	3.7	20	68	16	57	44	1	7	46	1.40
569345--569427	20	3.9	20	78	13	78	43	2	7	46	1.44
569411--569445	18	1.9	18	88	0	52	45	2	8	42	1.49
569371--569449	20	4.0	20	75	9	63	45	2	8	43	1.48
569354--569450	40	2.4	40	79	10	115	43	2	9	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569462--569530	33	2.2	32	92	5	113	39	7	8	44	1.63
569468--569535	18	3.9	18	74	21	74	39	7	10	42	1.67
569514--569591	38	2.1	38	97	0	147	43	12	6	37	1.69
569468--569573	18	5.9	18	70	24	73	41	9	8	40	1.68
569532--569591	20	3.1	20	69	26	65	45	13	5	36	1.65
569639--569737	20	4.6	21	72	17	62	53	2	6	38	1.37
569646--569691	25	1.9	24	86	8	67	50	4	6	39	1.48
569713--569737	6	4.2	6	100	0	50	68	0	0	32	0.90
569747--569849	9	11.3	9	67	20	54	51	4	0	43	1.23
569759--569891	26	5.3	24	70	20	87	48	3	1	45	1.29
569763--570058	20	14.4	20	69	17	119	45	5	4	44	1.46
569855--569892	11	3.5	11	88	0	58	44	2	2	50	1.30
569934--569992	27	2.2	26	88	8	84	40	5	8	45	1.56
569986--570063	2	37.0	2	70	14	50	46	5	2	46	1.38
569987--570060	22	3.5	20	75	20	62	45	5	2	45	1.40
569962--570060	42	2.5	42	88	9	145	44	6	3	46	1.43
570088--570480	216	1.8	216	94	0	696	29	11	8	50	1.68
574195--574263	26	3.0	22	76	15	84	40	10	5	43	1.62
578654--578848	80	2.4	79	87	4	266	23	21	26	29	1.99
580636--580682	21	2.2	21	100	0	94	29	29	19	21	1.97
581471--581539	17	4.2	17	78	17	83	18	44	23	13	1.84
581493--581529	13	2.8	13	100	0	74	16	48	24	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581547--581626	29	2.8	29	96	0	142	23	8	22	45	1.80
588735--588803	17	4.2	17	78	17	83	18	44	23	13	1.84
588757--588793	13	2.8	13	100	0	74	16	48	24	10	1.77
588811--588890	29	2.8	29	96	0	142	23	8	22	45	1.80
593288--593463	92	1.9	90	91	4	291	38	22	15	23	1.93
595687--595725	7	5.7	7	93	6	62	79	0	20	0	0.73
595687--595725	13	2.9	13	92	3	60	79	0	20	0	0.73
595687--595725	20	1.9	20	89	5	60	79	0	20	0	0.73
596513--596550	16	2.3	17	86	13	53	42	0	2	55	1.14
599021--599389	184	2.0	184	100	0	738	44	4	5	45	1.48

Tables:   1   2   3   4   5