genome.fa.s5983.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005983.1 Hibiscus syriacus cultivar Beakdansim tig00014064_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  781742

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 495 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604473--604533	30	2.0	30	81	6	70	54	6	8	31	1.56
617572--617602	15	2.1	15	93	0	53	54	0	0	45	0.99
618828--619029	102	1.9	103	91	5	325	38	26	11	23	1.89
619893--619965	35	2.1	35	94	0	128	31	13	24	30	1.94
623544--623582	2	19.5	2	100	0	78	48	0	0	51	1.00
623867--623911	22	2.0	22	91	0	72	17	26	37	17	1.93
623874--623917	22	2.0	22	95	0	79	20	22	34	22	1.97
624148--624205	21	2.8	18	78	19	53	29	1	1	67	1.11
625686--625722	18	2.1	18	100	0	74	21	10	27	40	1.86
626437--626480	13	3.4	13	80	0	52	15	2	13	68	1.31
626502--626583	33	2.4	34	84	8	105	24	2	13	59	1.46
629709--629746	20	2.0	19	90	10	60	23	18	5	52	1.65
630129--630183	28	1.9	29	82	10	69	47	5	9	38	1.58
631375--631420	21	2.2	21	84	0	56	36	4	2	56	1.31
634707--634932	41	5.5	41	91	2	292	40	25	18	15	1.90
634753--634904	20	7.4	20	65	15	78	39	26	21	13	1.89
634773--634843	21	3.4	21	67	18	67	36	28	21	14	1.92
634857--634928	21	3.5	21	69	3	74	34	27	18	19	1.95
637753--638033	129	2.2	129	83	4	352	28	16	24	31	1.96
637752--638033	43	6.5	44	80	7	303	28	15	24	31	1.96
637959--638077	43	2.8	42	79	12	109	23	18	24	33	1.97
637752--638033	86	3.3	86	86	2	379	28	15	24	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641285--641623	42	8.2	42	84	5	424	33	19	20	27	1.97
641285--641662	42	9.2	41	82	6	410	32	19	20	27	1.97
641285--641623	83	4.1	84	84	4	422	33	19	20	27	1.97
642162--642389	41	5.5	42	79	15	210	30	17	17	34	1.93
642187--642487	41	7.3	40	75	12	220	28	18	18	33	1.95
642230--642554	42	7.9	40	77	16	240	27	19	18	34	1.96
642251--642553	82	3.7	83	81	12	281	26	19	19	34	1.96
642188--642554	124	3.0	123	77	13	314	28	19	18	34	1.95
646431--646826	74	5.6	74	73	17	260	46	2	5	45	1.37
646435--646826	36	11.1	36	73	17	276	46	2	5	45	1.38
646614--646664	24	2.1	24	92	0	84	49	0	3	47	1.20
646580--646700	60	2.0	60	98	0	233	46	0	5	47	1.26
646513--646755	134	1.8	131	90	4	389	46	1	5	47	1.33
646750--646827	41	1.9	41	91	0	129	48	1	5	44	1.32
648707--648855	35	4.3	35	85	3	174	43	20	0	34	1.57
648849--648923	35	2.1	35	85	0	96	36	0	20	44	1.52
650844--650910	21	3.2	20	76	4	62	20	20	19	38	1.93
650900--650954	20	2.6	21	80	8	67	40	16	21	21	1.91
651491--651557	19	3.5	19	83	2	80	47	23	16	11	1.80
651553--651717	19	9.1	19	75	15	152	13	23	20	43	1.86
651558--651692	33	3.9	33	85	10	171	12	22	21	42	1.86
651553--651695	71	2.0	72	91	1	234	13	23	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653851--653917	21	3.2	21	66	6	55	23	35	20	19	1.95
655274--655309	14	2.6	14	95	0	63	30	0	25	44	1.54
655424--655489	33	2.0	33	96	0	123	43	21	25	9	1.81
655424--655476	19	3.1	19	71	23	62	45	20	24	9	1.81
655492--655585	19	5.5	19	63	23	64	18	21	17	43	1.88
655494--655584	33	2.7	34	86	5	132	17	20	17	43	1.87
658071--658124	24	2.2	24	90	0	81	40	20	16	22	1.91
658933--659024	20	4.6	20	73	2	76	39	21	18	20	1.93
659238--659333	20	4.8	20	76	10	97	41	20	19	17	1.90
659258--659345	40	2.4	38	83	11	112	42	20	20	17	1.90
659352--659419	19	3.8	19	85	12	83	16	22	14	47	1.82
661458--661597	20	7.9	18	71	20	89	44	21	20	14	1.86
661517--661568	14	3.4	14	74	23	50	51	21	15	11	1.74
661500--661592	33	2.8	32	91	1	141	46	20	18	15	1.84
661604--661667	19	3.7	17	73	23	62	14	20	20	45	1.85
661653--661695	20	2.2	20	87	4	61	18	23	20	37	1.94
661661--661726	20	3.3	20	89	0	87	19	18	22	39	1.92
662208--662252	18	2.5	18	88	0	72	13	15	44	26	1.83
663572--663630	20	3.0	20	87	0	73	42	22	18	16	1.89
663893--663936	22	2.0	22	90	0	70	20	15	43	20	1.88
664104--664238	20	6.7	20	78	7	103	25	17	23	32	1.97
664104--664240	61	2.2	61	82	0	175	25	17	23	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664288--664328	21	2.0	21	85	0	55	34	29	17	19	1.94
665960--666051	31	3.1	31	80	9	102	39	3	7	50	1.47
665928--666051	62	2.1	59	80	7	133	37	3	8	50	1.50
665999--666067	31	2.3	32	87	9	101	37	5	5	50	1.50
673722--673778	20	2.9	19	75	15	53	56	5	5	33	1.44
673846--673908	2	32.0	2	96	3	119	49	0	0	50	1.00
684654--684707	24	2.2	24	100	0	108	37	3	7	51	1.48
691557--691593	2	18.5	2	100	0	74	51	0	0	48	1.00
691758--691845	24	3.7	24	83	3	106	50	15	14	19	1.79
691751--691859	48	2.3	47	85	6	139	49	15	16	18	1.80
691753--691822	12	5.8	12	70	12	54	52	17	14	15	1.74
691752--691859	24	4.5	24	75	9	87	49	15	16	18	1.81
698740--698815	36	2.1	36	97	0	143	31	10	14	43	1.79
699904--700591	135	5.0	135	80	6	697	31	16	19	32	1.94
700288--700343	27	2.1	27	89	0	85	32	14	19	33	1.92
700426--700477	26	2.0	27	84	3	70	32	17	17	32	1.93
699904--700591	274	2.5	274	88	1	981	31	16	19	32	1.94
712691--712786	5	18.4	5	70	17	54	71	3	5	19	1.18
712725--712785	16	3.8	16	74	22	56	73	3	4	18	1.14
712727--712786	17	3.7	17	72	17	56	75	3	3	18	1.09
712715--712786	31	2.3	31	87	2	99	73	2	5	18	1.15
714344--714802	106	4.3	106	86	3	605	24	17	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714346--714802	217	2.1	215	86	2	616	24	17	23	34	1.96
718883--718982	30	3.3	30	90	2	139	32	26	21	21	1.98
718964--719032	31	2.2	31	84	5	86	33	21	21	23	1.97
719686--719712	2	13.5	2	100	0	54	48	0	0	51	1.00
723601--723703	30	3.4	30	91	2	145	31	26	21	21	1.98
723604--723728	30	4.1	30	88	2	144	32	26	21	20	1.98
723658--723753	31	3.1	31	83	3	95	34	22	20	21	1.97
724983--725027	21	2.1	21	84	8	56	15	22	28	33	1.95
734220--734244	12	2.1	12	100	0	50	76	0	0	24	0.80
734276--734310	17	2.1	17	89	10	54	82	2	0	14	0.77
734530--734588	16	3.7	15	72	22	50	74	3	3	18	1.10
734528--734589	17	3.8	17	71	16	60	74	3	3	19	1.10
734518--734589	31	2.3	31	87	2	99	73	2	4	19	1.12
737432--737657	114	1.9	117	88	5	341	36	21	14	27	1.92
738519--738633	59	1.9	59	92	0	194	28	13	14	42	1.84
738799--738875	31	2.5	31	91	0	118	23	29	14	32	1.94
745169--745198	15	2.0	15	100	0	60	13	26	46	13	1.80
759471--759535	32	2.0	32	96	0	121	38	18	15	27	1.91
764556--764653	46	2.1	46	100	0	196	32	10	15	41	1.80
766653--766678	12	2.2	12	100	0	52	38	0	0	61	0.96
769475--769536	2	31.0	2	100	0	124	50	0	0	50	1.00
773470--773508	14	2.8	14	100	0	78	17	15	15	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
773455--773494	21	1.9	21	85	10	55	15	12	20	52	1.74
773602--773647	21	2.1	22	92	4	76	8	8	23	58	1.56
773629--773724	35	2.7	35	82	3	86	16	10	18	54	1.70
773587--773696	56	2.0	56	81	0	130	18	7	19	55	1.65
773648--773731	35	2.4	35	86	4	107	16	9	21	52	1.72
773700--773766	28	2.4	28	84	0	98	13	10	23	52	1.71
773690--773737	21	2.3	21	75	7	53	12	10	25	52	1.71
773803--773854	21	2.4	21	83	3	59	13	3	26	55	1.55
773830--773868	14	2.8	14	84	0	51	15	10	25	48	1.76
773874--773925	21	2.5	20	75	6	50	1	13	26	57	1.47

Tables:   1   2   3   4   5