genome.fa.s6564.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006564.1 Hibiscus syriacus cultivar Beakdansim tig00016065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1886890

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364390--364457	24	2.8	24	84	0	91	35	14	19	30	1.92
369833--369877	11	4.1	11	82	5	56	71	4	11	13	1.29
369833--369874	22	1.9	22	90	9	68	69	4	11	14	1.34
373620--373668	14	3.5	13	83	10	62	2	10	6	81	0.94
373633--373676	22	1.9	22	86	9	61	2	9	6	81	0.94
374003--374047	11	4.1	11	82	5	56	71	4	11	13	1.29
374003--374044	22	1.9	22	90	9	68	69	4	11	14	1.34
377793--377839	14	3.6	14	80	11	55	2	12	8	76	1.09
377784--377846	25	2.7	22	75	15	72	1	12	7	77	1.05
377784--377846	12	5.5	11	79	17	58	1	12	7	77	1.05
377784--377851	11	5.7	12	78	14	70	1	11	10	76	1.09
380476--380526	20	2.6	20	90	3	77	37	13	5	43	1.69
387213--387280	35	1.9	36	93	3	120	29	2	36	30	1.72
394323--394366	6	7.2	6	82	12	54	79	0	18	2	0.83
412037--412076	14	2.9	14	92	3	64	22	45	0	32	1.53
412233--412268	15	2.4	15	95	0	63	8	25	2	63	1.36
414479--414514	15	2.4	15	90	0	54	66	2	22	8	1.31
414670--414705	14	2.6	14	91	4	56	27	0	47	25	1.52
414670--414708	13	2.9	13	85	7	51	33	0	43	23	1.54
417340--417407	33	2.1	33	81	15	79	60	1	25	13	1.42
419160--419246	45	1.9	45	83	4	113	27	18	18	35	1.94
421888--421923	15	2.4	15	90	0	54	61	2	27	8	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422424--422474	13	3.8	13	92	7	77	27	45	0	27	1.54
422631--422666	15	2.4	15	90	0	54	8	27	2	61	1.39
422848--422876	14	2.1	14	93	6	51	82	0	17	0	0.66
423052--423110	16	3.8	16	71	13	59	15	23	0	61	1.34
426292--426333	14	3.1	14	93	3	68	26	38	0	35	1.57
426296--426335	13	3.0	13	92	3	62	25	42	0	32	1.55
440913--440947	18	1.9	18	100	0	70	17	8	40	34	1.80
445983--446021	18	2.2	18	85	0	51	23	10	30	35	1.88
453592--453685	28	3.0	30	81	18	129	53	7	1	38	1.36
457858--457932	35	2.1	35	95	0	132	29	38	2	29	1.71
458396--458444	24	2.1	22	85	7	62	63	4	18	14	1.46
463548--463573	13	2.0	13	100	0	52	30	38	0	30	1.58
463550--463629	35	2.3	36	91	4	128	30	41	2	26	1.69
465604--465643	13	3.4	13	77	22	52	75	0	20	5	0.99
469546--469597	25	2.0	26	88	3	79	46	9	9	34	1.69
471203--471244	20	2.1	20	86	8	59	59	7	7	26	1.50
476784--476821	19	2.1	18	90	5	58	84	0	15	0	0.63
476784--476821	9	4.1	9	90	6	58	84	0	15	0	0.63
487195--487243	19	2.6	19	87	6	64	46	6	12	34	1.66
490284--490308	13	1.9	13	100	0	50	32	0	40	28	1.57
490798--490861	26	2.5	26	97	0	119	23	25	32	18	1.97
499756--499787	11	3.0	11	95	4	57	0	18	0	81	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500019--500059	15	2.6	16	81	14	50	56	0	29	14	1.39
499989--500048	9	6.3	9	72	16	50	60	0	28	11	1.32
499991--500057	35	2.0	33	85	11	91	58	0	28	13	1.36
501660--501707	15	3.2	15	81	0	60	12	12	64	10	1.50
505416--505455	20	2.0	20	85	9	55	70	5	15	10	1.32
506297--506321	2	12.5	2	100	0	50	52	0	0	48	1.00
509997--510025	13	2.2	13	100	0	58	0	13	0	86	0.58
510797--510833	19	1.9	19	94	0	65	48	5	8	37	1.56
512329--512491	90	1.8	89	89	1	254	39	8	6	45	1.60
514526--514564	18	2.2	18	100	0	78	33	30	5	30	1.79
517300--517467	90	1.9	89	91	1	273	35	11	7	46	1.67
517434--517503	22	3.3	20	71	26	63	48	2	4	44	1.37
524193--524232	20	2.0	20	85	9	55	47	2	2	47	1.29
527437--527603	90	1.9	88	87	2	244	39	10	7	42	1.67
527570--527609	20	2.0	20	85	9	55	47	2	2	47	1.29
534175--534318	75	1.9	74	94	1	252	35	11	5	47	1.62
540558--540610	24	2.1	26	86	6	74	58	15	13	13	1.64
540596--540636	13	3.1	13	86	6	55	80	2	17	0	0.82
547627--547762	44	3.0	45	82	3	175	33	18	6	41	1.76
548632--548681	23	2.2	23	100	0	100	30	18	8	44	1.78
549887--549960	30	2.5	30	76	12	80	31	18	9	40	1.83
573202--573230	10	2.9	10	100	0	58	31	10	31	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
590146--590197	15	3.4	16	77	15	56	69	0	21	9	1.17
590795--590870	35	2.2	35	85	0	98	34	2	34	28	1.71
600308--600361	24	2.2	24	96	0	99	31	20	11	37	1.88
609410--609786	180	2.1	176	78	8	390	41	7	10	39	1.69
611203--611267	3	21.7	3	100	0	130	32	0	0	67	0.91
611479--611516	17	2.2	17	86	9	51	42	5	7	44	1.56
614118--614274	33	4.8	32	77	8	122	52	8	3	35	1.49
616712--616747	16	2.3	16	95	4	65	47	5	0	47	1.25
617364--617558	83	2.3	83	87	2	275	21	19	24	34	1.96
617661--617814	66	2.3	66	85	5	193	37	11	20	31	1.88
617771--617917	33	4.4	33	85	4	172	33	9	17	40	1.81
617770--617924	66	2.3	66	84	6	197	32	10	16	40	1.83
617987--618144	36	4.4	36	88	5	230	37	13	19	29	1.91
617989--618126	21	7.4	21	66	27	87	37	12	20	29	1.89
617970--618146	72	2.4	73	83	8	243	38	13	19	28	1.90
618681--618775	32	2.9	32	85	1	118	37	21	10	30	1.87
619837--619881	13	3.5	13	82	17	58	2	17	4	75	1.07
619836--619887	27	2.0	26	88	7	79	5	15	3	75	1.14
623138--623171	16	2.1	16	89	10	52	76	0	8	14	1.01
624513--624552	20	2.0	20	95	0	71	27	12	45	15	1.82
624750--624788	16	2.4	17	91	8	71	48	5	0	46	1.24
625395--625589	83	2.3	84	82	3	250	22	19	24	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625817--625921	33	3.1	34	84	9	137	33	10	17	39	1.84
625974--626148	36	4.8	36	87	2	244	36	14	20	28	1.92
626066--626130	21	3.4	21	72	24	79	40	10	20	29	1.86
626071--626131	19	3.3	19	70	25	67	39	11	19	29	1.87
627836--627884	13	3.8	13	84	15	66	2	18	4	75	1.06
627835--627886	27	2.0	25	92	7	86	3	17	3	75	1.11
631038--631075	14	2.6	14	91	4	58	73	5	2	18	1.14
635167--635201	12	2.8	12	86	4	52	77	5	14	2	1.07
644313--644387	21	3.5	21	74	13	80	24	9	22	44	1.82
654334--654426	35	2.7	35	91	0	150	33	4	34	27	1.77
654788--654838	19	2.5	20	81	12	59	50	5	5	37	1.51
654788--654830	20	2.0	21	86	8	61	53	4	2	39	1.34
660174--660224	19	2.6	20	90	3	77	43	5	13	37	1.69
668053--668337	54	5.3	53	81	0	183	34	18	17	29	1.94
668075--668336	108	2.4	107	82	3	319	35	17	16	30	1.93
668615--668667	22	2.5	21	84	6	63	32	18	15	33	1.92
699542--699579	18	2.1	18	100	0	76	44	10	23	21	1.83
699878--699916	15	2.6	15	87	0	51	53	2	17	25	1.56
700021--700089	35	2.0	35	85	5	95	42	11	13	33	1.80
700056--700118	23	2.9	23	83	6	87	36	7	11	44	1.69
701039--701104	31	2.2	31	83	2	80	57	4	0	37	1.19
701054--701121	31	2.3	31	85	7	88	57	4	0	38	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701161--701199	4	9.8	4	94	0	69	51	20	0	28	1.48
705918--706391	54	8.9	54	82	3	537	32	17	18	32	1.94
705920--706391	107	4.4	108	85	2	567	32	17	18	32	1.94
708117--708151	18	1.9	18	88	0	52	20	22	31	25	1.98
712298--712354	20	2.7	21	75	5	62	36	12	26	24	1.91
712576--712792	54	4.0	54	85	0	281	30	17	18	33	1.95
712576--712778	108	1.9	108	90	0	325	31	17	18	33	1.94
714831--714900	17	4.1	17	84	0	95	41	5	15	37	1.71
714834--714916	34	2.4	35	88	6	116	40	7	14	37	1.74
719875--719923	23	2.1	23	100	0	98	30	8	28	32	1.86

Tables:   1   2   3   4   5   6   7   8