genome.fa.s6564.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006564.1 Hibiscus syriacus cultivar Beakdansim tig00016065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1886890

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721976--722034	18	3.3	18	66	17	50	28	16	37	16	1.92
721960--722034	36	2.1	36	92	0	123	28	16	38	17	1.91
723733--723774	12	3.5	12	83	0	57	35	28	11	23	1.91
724139--724263	47	2.8	43	83	9	151	32	20	6	40	1.78
724999--725846	423	2.0	424	97	0	1599	19	12	16	51	1.76
740731--740773	17	2.5	17	80	0	50	39	6	11	41	1.68
741612--741647	17	2.1	17	94	0	63	50	2	22	25	1.63
745577--745648	22	3.2	22	71	11	65	38	8	12	40	1.73
754975--755020	24	1.9	24	86	8	67	34	0	2	63	1.07
754987--755030	17	2.6	17	82	7	54	38	0	0	61	0.96
754987--755056	33	2.1	33	84	10	90	35	1	1	61	1.14
755214--755277	26	2.5	26	97	0	119	28	3	9	59	1.44
755377--755402	2	13.0	2	100	0	52	50	0	0	50	1.00
760168--760215	24	2.1	22	84	7	60	37	8	10	43	1.69
776743--776776	18	1.9	18	88	5	52	44	14	14	26	1.84
779409--779709	65	4.7	64	73	13	235	26	20	12	40	1.88
779763--780111	131	2.6	130	78	4	371	25	31	17	25	1.97
780969--781002	17	1.9	18	88	5	52	67	0	26	5	1.13
783849--783911	21	3.2	20	71	22	51	68	1	14	15	1.29
789527--789621	24	3.7	24	68	15	64	35	27	7	29	1.84
790248--790276	15	1.9	15	100	0	58	31	27	27	13	1.94
804809--804887	32	2.5	31	81	4	95	49	12	7	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847390--847421	14	2.2	15	94	5	57	65	6	3	25	1.31
854625--855282	131	5.0	129	79	6	535	29	15	20	34	1.93
854629--855201	262	2.2	262	80	4	620	30	15	20	33	1.94
857835--858061	54	4.2	54	84	5	255	28	19	18	34	1.95
857835--858061	108	2.1	108	84	3	287	28	19	18	34	1.95
858691--858732	19	2.2	19	100	0	84	28	38	0	33	1.58
878386--878567	94	1.9	95	82	5	226	34	16	24	24	1.95
879705--879763	20	2.9	19	85	11	82	33	11	23	30	1.91
879827--879880	22	2.5	22	85	5	67	33	18	22	25	1.97
879749--879938	95	2.0	95	85	2	256	33	16	22	27	1.95
879753--879973	95	2.3	95	81	4	214	33	15	23	27	1.95
880293--880460	59	2.9	58	89	3	248	33	13	19	33	1.90
880834--881158	68	4.8	68	85	0	436	34	12	21	31	1.91
881108--881396	81	3.6	81	87	0	398	35	11	25	27	1.90
885690--885857	59	2.9	58	87	1	237	33	11	18	35	1.88
886222--886478	68	3.8	68	87	1	372	33	13	22	30	1.92
886221--886478	136	1.9	136	91	1	419	34	13	22	30	1.92
886428--886727	81	3.7	81	90	1	469	37	11	24	26	1.90
887537--888145	59	10.3	59	90	1	857	34	13	21	30	1.92
892837--892888	19	2.8	18	82	8	59	32	7	36	23	1.83
892843--892892	19	2.6	19	90	0	73	30	10	38	22	1.86
892790--893030	114	2.1	113	79	6	254	34	14	25	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
893359--893933	59	9.8	59	89	2	827	34	13	21	31	1.91
895396--895446	14	3.7	14	78	2	59	29	29	19	21	1.98
895448--895526	22	3.5	22	77	10	70	20	24	24	31	1.98
899103--899272	53	3.1	54	78	6	189	41	19	10	29	1.84
900237--900272	14	2.5	14	90	4	54	75	0	8	16	1.04
900225--900276	18	2.7	19	79	8	61	73	0	9	17	1.09
900902--900956	28	2.0	28	85	7	76	40	34	3	21	1.71
904006--904090	28	2.9	30	72	13	77	23	10	5	60	1.52
908289--908442	37	4.0	37	93	5	245	24	21	18	36	1.95
910938--910996	18	3.3	17	77	13	57	77	6	1	13	1.03
912673--912759	35	2.5	33	78	12	93	45	4	1	48	1.30
913461--913615	57	2.7	57	87	6	206	34	7	14	43	1.72
918961--919050	42	2.1	42	90	8	139	41	7	3	47	1.49
918973--919060	42	2.1	42	85	6	115	44	6	4	44	1.51
920446--920489	14	3.4	14	70	23	51	50	9	9	31	1.65
920442--920504	24	2.6	24	94	0	108	49	12	7	30	1.69
921266--921302	19	1.9	19	100	0	74	37	21	13	27	1.91
921823--921940	42	2.8	42	83	3	139	24	23	12	38	1.90
924627--924834	42	5.1	41	70	11	140	37	18	16	27	1.92
924698--924834	40	3.4	39	70	18	100	39	18	16	24	1.92
924627--924943	83	3.9	83	80	5	277	35	18	16	29	1.93
924806--924959	82	1.9	82	82	4	193	34	18	17	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
926455--926536	38	2.2	38	97	0	155	40	13	13	32	1.83
936979--937029	18	2.5	20	84	15	70	0	3	15	80	0.86
939600--939873	136	2.0	136	92	1	460	44	8	9	37	1.68
939949--940029	3	27.0	3	100	0	162	66	0	0	33	0.92
943956--943997	17	2.6	16	84	3	57	30	0	2	66	1.04
943932--943999	24	3.0	23	76	19	63	29	0	2	67	1.05
945746--945809	33	1.9	33	87	6	94	17	42	20	20	1.90
946283--946356	34	2.2	34	81	11	82	21	2	13	62	1.44
946294--946370	34	2.2	34	84	11	95	20	1	16	61	1.42
950478--950834	185	1.9	187	87	4	531	23	23	24	28	2.00
955279--955317	17	2.2	17	86	9	51	43	0	0	56	0.99
956727--956796	22	3.2	22	89	2	97	12	20	11	55	1.67
956738--956811	22	3.3	22	86	3	85	13	20	10	55	1.68
956772--956820	23	2.2	23	85	3	64	16	18	14	51	1.77
963052--963383	166	2.0	166	100	0	664	33	16	16	32	1.92
966530--966564	12	3.0	12	87	4	54	11	14	8	65	1.46
969389--969528	64	2.2	63	82	7	167	32	17	22	26	1.97
969516--969573	20	2.7	20	84	10	71	31	20	22	25	1.98
971170--971237	23	3.0	23	77	0	82	19	25	25	30	1.98
972341--972390	14	3.5	14	76	15	57	18	12	18	52	1.75
972334--972390	29	1.9	30	89	3	89	17	12	15	54	1.71
974746--974844	51	1.9	51	84	11	132	19	12	11	57	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
974973--975047	15	5.1	15	68	21	52	21	0	5	73	1.03
974973--975031	25	2.3	26	91	2	93	20	0	5	74	1.00
974973--975033	5	12.0	5	77	16	63	19	0	4	75	0.98
977657--977783	63	2.0	63	100	0	254	34	21	15	28	1.94
979958--980261	54	5.6	54	85	4	371	33	15	15	34	1.90
979958--980261	162	1.9	162	86	2	432	33	15	15	34	1.90
988427--988465	3	13.0	3	100	0	78	33	0	0	66	0.92
989656--989692	15	2.5	15	90	0	56	21	0	5	72	1.04
989919--990239	30	10.8	30	76	7	190	20	12	9	57	1.62
994492--994528	2	19.0	2	94	5	67	51	0	0	48	1.00
995352--995397	4	12.0	4	81	9	60	50	21	0	28	1.49
995340--995403	16	3.8	17	80	10	78	50	23	1	25	1.58
995749--995820	36	2.0	36	94	0	126	30	22	9	37	1.86
996043--996111	30	2.4	27	81	13	77	27	13	10	49	1.73
996211--996329	64	1.9	63	87	8	179	25	14	17	42	1.87
996243--996444	108	1.9	109	79	10	234	27	16	16	40	1.89
996983--997025	12	3.5	12	80	3	50	30	0	0	69	0.88
996990--997044	25	2.4	22	82	11	58	36	1	0	61	1.06
998472--998585	59	1.9	60	81	1	140	19	14	10	55	1.68
998489--998642	30	5.2	29	76	8	105	19	16	8	55	1.67
998512--998674	60	2.7	60	76	5	141	18	17	10	53	1.71
998533--998835	30	10.4	29	73	12	149	18	15	9	56	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998489--998672	90	2.1	89	80	3	199	18	16	9	54	1.69
998731--998819	24	3.5	24	73	16	70	17	6	10	65	1.44
998707--998819	54	2.1	54	83	3	138	17	7	9	64	1.47
999780--999825	19	2.3	20	88	3	67	41	4	2	52	1.33
999824--1000034	73	3.0	71	85	5	268	42	9	4	43	1.59
999818--1000038	35	6.2	35	76	6	196	42	9	4	43	1.57
1000662--1000719	30	1.9	30	89	0	89	34	22	31	12	1.91
1002406--1002470	26	2.5	26	97	0	121	13	12	38	35	1.83
1002152--1002732	291	2.0	281	89	5	873	25	13	20	40	1.89
1006443--1006502	26	2.3	26	94	0	102	15	10	36	38	1.80

Tables:   1   2   3   4   5   6   7   8