genome.fa.s6564.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006564.1 Hibiscus syriacus cultivar Beakdansim tig00016065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1886890

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 894 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1769238--1769591	39	9.2	38	87	1	233	36	15	19	28	1.92
1769286--1769592	39	7.9	39	88	0	436	36	16	18	28	1.93
1769244--1769592	117	3.0	117	90	1	506	36	16	19	28	1.93
1769599--1769834	75	3.1	76	86	6	318	41	13	16	28	1.86
1770648--1770691	18	2.6	16	76	13	52	18	11	6	63	1.48
1772470--1772590	59	2.1	59	90	0	188	37	23	14	24	1.93
1787163--1787234	3	24.3	3	94	2	128	66	0	1	31	1.00
1789647--1789707	27	2.4	25	76	12	63	26	24	22	26	2.00
1789660--1789712	27	2.0	26	88	3	79	24	24	22	28	2.00
1795928--1796044	54	2.1	55	87	1	164	19	18	24	36	1.94
1796085--1796258	57	3.1	57	79	3	206	31	20	15	32	1.94
1802757--1802804	24	2.0	24	100	0	96	41	8	16	33	1.78
1817318--1817383	27	2.4	27	82	5	87	16	21	16	45	1.85
1817430--1817515	43	2.0	43	88	0	127	19	29	22	29	1.98
1819622--1819653	15	2.1	15	94	0	55	37	21	6	34	1.79
1821568--1821745	90	2.0	90	94	0	311	36	11	6	45	1.66
1822843--1822898	27	2.1	27	86	0	76	35	25	10	28	1.89
1824392--1824452	23	2.7	23	89	0	95	31	27	22	18	1.97
1831347--1831396	23	2.2	23	88	0	73	30	28	26	16	1.96
1831355--1831407	23	2.3	23	93	0	88	26	26	28	18	1.98
1840503--1840595	11	8.6	11	69	15	61	76	1	4	18	1.01
1840503--1840598	28	3.6	26	73	19	90	75	1	4	19	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1840503--1840595	8	10.9	8	72	13	53	76	1	4	18	1.01
1840518--1840580	9	6.9	9	77	10	56	79	0	6	14	0.92
1840503--1840580	17	4.3	17	71	12	57	76	0	5	17	0.96
1843842--1843943	29	3.5	29	68	7	89	35	14	18	31	1.91
1843843--1843988	59	2.5	60	86	5	199	34	15	16	32	1.91
1845297--1845440	73	2.0	71	94	5	254	33	22	13	31	1.92
1846883--1846907	12	2.1	12	100	0	50	48	0	0	52	1.00
1851644--1851752	52	2.1	52	84	3	139	50	3	28	17	1.63
1851770--1851880	53	2.1	53	83	6	136	37	5	32	24	1.78
1851905--1852037	65	2.0	65	86	2	187	24	3	30	42	1.70
1852002--1852255	103	2.5	103	83	4	282	30	6	29	33	1.83
1852616--1852719	33	3.3	29	79	15	100	48	4	2	44	1.39
1852629--1853072	33	13.6	33	76	12	255	44	7	5	42	1.55
1852723--1852820	51	1.9	51	89	0	151	39	12	5	42	1.64
1852782--1852891	31	3.5	31	77	16	93	44	5	5	44	1.50
1852855--1852918	26	2.5	25	82	7	74	43	7	6	42	1.58
1853023--1853120	42	2.3	43	87	5	137	50	1	5	43	1.31
1853065--1853160	28	3.3	31	74	17	82	52	1	2	44	1.19
1853023--1853160	42	3.3	41	81	9	120	51	0	3	44	1.24
1853019--1853145	2	64.0	2	69	18	70	51	0	3	44	1.25
1861360--1861475	60	1.9	60	82	3	144	33	27	0	37	1.63
1864592--1864657	2	33.0	2	100	0	132	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1864713--1864738	2	13.0	2	100	0	52	50	0	0	50	1.00
1865667--1865704	13	2.8	13	92	8	58	7	15	0	76	1.01
1865945--1866001	3	19.3	3	82	10	73	64	1	1	31	1.13
1865951--1866009	9	6.7	9	86	3	66	61	0	1	37	1.07
1866248--1866970	131	5.6	131	78	5	727	30	17	22	30	1.96
1868312--1868359	20	2.4	20	86	10	71	4	14	0	81	0.84
1868301--1868359	14	4.2	14	83	14	77	5	11	1	81	0.93
1881604--1881630	2	13.5	2	100	0	54	48	0	0	51	1.00
1882612--1882668	25	2.3	24	80	19	64	3	15	3	77	1.05
1883081--1883114	16	2.2	15	89	5	50	58	0	2	38	1.13

Tables:   1   2   3   4   5   6   7   8

The End!