genome.fa.s7428.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007428.1 Hibiscus syriacus cultivar Beakdansim tig00020138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  917797

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152297--152375	19	4.4	19	76	16	87	43	18	22	15	1.88
152556--152590	14	2.5	14	90	0	61	45	20	0	34	1.51
153941--154007	21	3.2	21	68	4	55	19	20	35	23	1.95
154460--154531	20	3.6	21	79	3	78	48	18	19	13	1.81
154460--154538	41	2.0	40	87	9	117	49	16	20	13	1.79
154564--154623	19	3.4	18	71	21	56	13	16	25	45	1.84
154574--154643	33	2.1	33	94	0	122	10	20	21	48	1.78
154734--155109	94	4.1	94	93	2	611	46	18	12	21	1.82
155473--155547	21	3.7	21	67	19	52	14	13	41	30	1.84
156804--156866	20	3.2	20	78	17	76	46	17	22	14	1.84
156864--156947	19	4.7	19	69	19	72	48	21	19	10	1.78
156810--156936	52	2.4	53	86	2	166	47	20	21	11	1.81
156974--157064	20	4.6	20	76	14	89	12	16	18	52	1.74
157337--157388	27	2.0	26	88	7	79	21	11	34	32	1.89
157616--157709	20	4.7	20	81	2	116	19	19	21	40	1.92
157706--157792	21	4.2	21	79	2	95	37	18	24	19	1.94
157618--157743	61	2.1	61	80	3	137	24	19	21	34	1.97
161368--161410	22	2.0	22	86	13	63	65	13	6	13	1.46
162373--162412	17	2.6	16	88	11	57	57	2	2	37	1.26
162995--163062	35	2.0	35	85	2	93	38	20	20	20	1.94
163029--163174	77	1.9	77	85	0	202	36	17	21	23	1.94
164382--164462	39	2.1	39	92	0	135	53	11	4	30	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
164632--164676	20	2.3	19	84	3	54	31	13	2	53	1.52
171481--171537	30	1.9	30	100	0	114	52	3	17	26	1.60
176755--176856	3	34.0	3	100	0	204	33	0	0	66	0.92
189048--190025	106	9.3	106	89	3	1395	33	24	18	23	1.97
189048--190026	318	3.1	317	92	1	1583	33	24	18	23	1.96
190756--190852	37	2.6	37	85	0	140	39	16	12	31	1.86
191389--191481	2	48.0	2	93	6	165	48	0	0	51	1.00
191671--191732	18	3.5	17	73	16	56	25	6	3	64	1.33
191777--191824	13	3.8	12	81	13	53	12	10	0	77	1.00
191768--191844	25	2.9	25	73	17	75	15	11	0	72	1.11
191768--191824	12	4.6	12	79	12	53	15	8	0	75	1.04
194144--194186	16	2.7	16	100	0	86	41	0	18	39	1.51
203958--204036	28	2.8	28	94	5	133	40	15	6	37	1.72
209902--209979	41	1.9	41	83	0	102	20	7	16	55	1.66
214139--214295	45	3.5	44	75	10	133	28	19	15	36	1.93
216118--216229	44	2.5	44	75	2	118	29	21	18	30	1.97
216513--216562	15	3.1	16	77	8	57	76	2	16	6	1.08
218097--218204	43	2.5	43	83	5	121	30	21	15	32	1.94
218272--218315	21	2.1	21	95	0	79	34	18	22	25	1.96
220272--220313	21	2.0	22	90	4	68	35	19	19	26	1.95
226194--226239	22	2.0	23	87	4	67	19	6	30	43	1.76
233504--233594	35	2.6	35	79	6	94	28	21	12	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233916--234161	29	7.8	29	65	28	94	24	20	14	40	1.89
233839--234179	65	5.3	65	91	2	553	24	19	14	41	1.89
234345--234538	83	2.3	83	82	0	253	26	31	17	24	1.97
234235--234657	217	1.9	217	83	2	546	27	30	16	24	1.97
234433--234807	134	2.7	137	83	3	445	28	30	17	23	1.97
235016--235079	3	21.3	3	100	0	128	34	0	0	65	0.93
239149--239248	23	4.6	23	64	30	67	36	0	4	60	1.16
239133--239262	64	2.0	64	100	0	260	37	0	4	57	1.19
239896--239955	24	2.6	23	81	5	66	46	21	21	10	1.80
239980--240013	13	2.6	13	90	0	50	73	14	2	8	1.19
240919--240971	21	2.6	20	74	11	54	28	5	7	58	1.48
241067--241091	5	5.0	5	100	0	50	20	0	0	80	0.72
246931--247148	77	2.9	76	79	8	230	32	16	12	38	1.87
247165--248005	39	21.6	39	91	0	1265	28	19	17	34	1.94
248364--248575	44	4.8	44	72	2	172	28	20	21	29	1.98
248604--248699	50	1.9	49	87	6	140	29	18	21	30	1.97
256616--256656	17	2.6	16	85	14	59	56	4	2	36	1.34
257027--257178	46	3.4	46	73	11	152	23	21	16	39	1.92
258154--258202	22	2.2	22	100	0	98	36	14	12	36	1.83
258988--259084	40	2.4	40	87	0	149	27	27	12	31	1.93
270919--270997	28	2.8	28	94	5	133	40	15	6	37	1.72
279297--279346	15	3.1	16	77	8	57	76	2	16	6	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281057--281100	21	2.1	21	91	0	70	34	18	20	27	1.96
289000--289049	22	2.3	21	83	12	66	22	6	26	46	1.74
296347--296436	36	2.5	36	78	8	92	32	18	12	36	1.88
296369--296460	36	2.6	36	77	5	96	28	21	11	38	1.89
296780--296895	29	3.8	29	68	24	85	25	20	14	39	1.91
296705--296915	65	3.3	65	92	2	345	23	19	14	41	1.89
297085--297278	83	2.3	83	81	0	235	26	31	17	25	1.97
296975--297385	217	1.9	217	83	5	535	28	30	16	25	1.96
297173--297547	134	2.8	134	78	9	368	30	30	14	24	1.95
297753--297810	3	19.3	3	100	0	116	34	0	0	65	0.93
301558--301606	8	6.0	8	80	4	53	32	0	0	67	0.91
302719--302752	13	2.6	13	90	0	50	73	14	2	8	1.19
307208--307248	21	2.0	22	90	9	68	65	12	7	14	1.45
308294--308334	15	2.8	14	85	10	55	58	0	2	39	1.11
308294--308333	17	2.6	16	88	11	57	57	0	2	40	1.12
308704--308852	44	3.3	44	77	9	158	21	20	16	42	1.89
309830--309898	22	3.1	22	95	0	120	36	11	15	36	1.84
310555--310657	40	2.6	40	87	0	143	26	25	15	33	1.95
317354--317393	17	2.6	16	88	11	57	57	2	2	37	1.26
319284--319364	39	2.1	39	90	0	126	54	9	4	30	1.55
332686--332741	3	19.0	3	96	3	105	32	0	0	67	0.91
340430--340461	12	2.7	12	100	0	64	50	18	31	0	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341735--341759	12	2.1	12	100	0	50	32	0	0	68	0.90
342185--342219	11	3.2	11	95	0	61	82	5	11	0	0.82
360369--360478	51	2.1	51	83	8	134	32	10	13	43	1.77
361131--361216	38	2.2	38	87	4	118	44	4	10	40	1.60
361280--361367	39	2.3	38	86	5	124	48	1	6	43	1.37
361295--361369	39	1.9	39	94	0	132	50	0	5	44	1.24
361341--361403	26	2.5	25	89	5	99	46	4	9	39	1.58
361372--361468	37	2.6	36	90	1	140	46	5	7	41	1.54
361429--361453	13	1.9	13	100	0	50	40	8	8	44	1.63
361603--361672	5	13.6	5	71	16	54	17	7	0	75	1.01
361616--361662	18	2.5	19	86	13	71	14	8	0	76	1.01
361603--361661	17	3.4	17	80	15	68	16	6	0	76	1.00
370560--370631	3	23.7	3	86	8	101	34	0	0	65	0.93
371972--372026	28	2.0	28	82	7	67	32	5	1	60	1.30
371992--372046	21	2.7	22	78	18	57	41	1	1	54	1.21
372014--372067	28	2.0	28	85	3	74	50	0	0	50	1.00
372034--372123	45	2.0	45	83	8	114	37	2	0	60	1.09
381616--381692	22	3.5	22	78	16	88	33	12	14	38	1.84
382067--382726	124	5.4	124	87	6	920	39	16	18	25	1.91
382974--383045	3	23.7	3	83	8	92	36	0	0	63	0.94
384389--384443	28	2.0	28	82	7	67	32	5	1	60	1.30
384409--384463	21	2.7	22	78	18	57	41	1	1	54	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384431--384484	28	2.0	28	85	3	74	50	0	0	50	1.00
384451--384540	45	2.0	45	83	8	114	37	2	0	60	1.09
395529--395638	51	2.1	51	83	8	134	32	10	13	43	1.77
406100--406179	31	2.6	30	80	7	99	38	7	11	42	1.69
406100--406209	31	3.7	31	75	16	92	39	9	10	40	1.72
406297--406375	28	2.8	29	92	5	135	40	15	6	37	1.72
411002--411162	44	3.6	44	74	9	148	28	20	14	36	1.93
411135--411178	21	2.1	21	95	0	79	31	22	22	22	1.98
413380--413422	20	2.2	20	95	0	77	18	4	32	44	1.71
415063--415106	21	2.1	21	95	0	79	34	18	22	25	1.96

Tables:   1   2   3   4   5