genome.fa.s7428.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007428.1 Hibiscus syriacus cultivar Beakdansim tig00020138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  917797

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 493 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414936--415261	155	2.1	154	97	0	607	29	16	18	34	1.93
417222--417270	21	2.3	22	89	7	82	32	20	20	26	1.97
430604--430692	36	2.4	36	78	9	92	34	20	11	33	1.88
430625--430708	36	2.3	36	82	9	100	30	20	10	38	1.87
430955--431248	65	4.5	65	85	2	392	24	19	13	42	1.88
431396--431590	83	2.3	83	79	3	239	24	31	17	26	1.97
431481--431812	134	2.4	137	83	3	420	28	31	16	24	1.96
431480--431879	139	2.9	139	79	4	323	28	31	16	24	1.96
432065--432095	3	10.3	3	100	0	62	35	0	0	64	0.94
435124--435195	29	2.4	29	79	9	83	31	15	8	44	1.76
436210--436302	21	4.4	21	69	17	66	33	2	4	60	1.28
436212--436300	22	4.1	22	71	15	78	34	2	4	58	1.31
436983--437036	24	2.2	24	83	3	63	48	18	22	11	1.79
436990--437043	25	2.2	24	90	3	81	48	18	22	11	1.79
441562--441601	21	2.0	20	90	5	62	67	12	7	12	1.41
442620--442660	17	2.6	16	88	11	59	56	7	0	36	1.27
442620--442658	14	2.6	14	88	12	51	56	7	0	35	1.28
443031--443182	44	3.4	45	68	11	123	23	21	14	40	1.90
443192--443555	191	1.9	190	82	5	448	23	20	15	40	1.90
444726--444760	15	2.3	15	100	0	70	37	11	34	17	1.85
444949--445051	40	2.6	40	82	0	134	27	24	14	33	1.94
450821--450867	20	2.2	21	88	7	69	61	12	6	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451811--451851	17	2.6	16	85	14	59	56	4	2	36	1.34
452479--452624	77	1.9	77	87	2	213	36	17	22	23	1.95
454043--454101	19	3.1	20	83	7	61	33	11	5	49	1.62
464445--464506	20	2.9	21	80	9	63	16	25	35	22	1.94
468317--468356	21	1.9	21	85	10	55	35	10	2	52	1.48
470201--470255	20	2.8	20	94	0	92	18	29	30	21	1.97
475270--475351	40	2.0	40	92	0	137	29	8	25	36	1.86
476046--476655	307	2.0	306	97	0	1159	31	14	18	34	1.91
479706--479759	3	18.0	3	100	0	108	33	0	0	66	0.92
480615--480644	3	10.0	3	100	0	60	66	0	0	33	0.92
486816--486856	19	2.1	20	95	4	75	53	7	9	29	1.60
488448--488489	19	2.2	20	91	4	68	19	11	30	38	1.88
489199--491367	226	9.6	226	86	2	2930	30	15	14	38	1.88
489199--492314	452	7.0	452	85	3	4054	31	15	14	38	1.88
491156--491578	209	2.0	208	95	0	765	29	15	14	40	1.88
492602--492709	20	5.3	21	67	16	75	38	2	4	53	1.36
492587--492673	41	2.1	41	95	0	156	34	2	4	58	1.31
492887--492932	11	4.3	11	78	13	51	47	0	6	45	1.28
495198--495246	26	1.9	25	87	4	71	48	4	10	36	1.56
500414--500441	6	4.7	6	100	0	56	82	0	0	17	0.68
501958--501998	18	2.3	18	86	0	55	19	46	21	12	1.82
504451--504562	24	4.7	24	90	4	154	24	18	19	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504736--504768	2	16.5	2	100	0	66	48	0	0	51	1.00
510766--510848	23	3.8	22	85	4	96	25	31	25	18	1.97
510767--510848	21	3.8	21	82	7	92	24	31	25	18	1.97
510767--510851	22	3.9	22	81	6	100	23	31	25	18	1.97
512729--512794	16	4.1	16	75	14	64	22	1	24	51	1.57
514213--515105	55	16.2	55	85	0	1113	28	22	17	32	1.96
515159--515272	37	3.1	37	83	7	144	25	17	18	38	1.92
515163--515273	36	3.1	35	84	6	141	24	18	18	38	1.93
515359--515473	37	3.1	37	90	5	178	21	21	18	38	1.94
517288--517323	13	2.8	13	91	0	54	41	16	8	33	1.78
517318--517515	85	2.3	85	87	5	285	27	19	18	33	1.96
519955--520036	39	2.1	38	93	2	137	1	37	8	52	1.40
523861--523900	15	2.7	15	88	11	64	5	22	10	62	1.46
531610--531639	14	2.1	14	93	0	51	76	10	3	10	1.12
533673--533728	27	2.0	28	89	3	87	55	14	1	28	1.49
534540--534598	23	2.7	22	75	17	59	30	27	16	25	1.97
534562--534668	23	4.7	23	84	0	142	29	23	21	25	1.99
534562--534668	46	2.3	46	87	4	162	29	23	21	25	1.99
537417--537460	21	2.1	21	100	0	88	45	9	4	40	1.56
539691--539739	24	2.0	24	96	0	89	12	10	12	65	1.48
551731--551776	21	2.2	21	88	0	65	13	30	34	21	1.91
553523--553594	36	2.0	36	97	2	137	31	8	43	16	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560167--560315	63	2.4	63	96	0	280	36	14	10	38	1.80
562056--562081	8	3.2	8	100	0	52	76	11	11	0	1.01
573434--573480	21	2.2	21	88	7	69	27	23	46	2	1.63
575022--575060	2	20.0	2	89	5	62	46	0	2	51	1.14
575146--575308	37	4.3	37	81	9	161	47	4	6	41	1.50
576465--576514	5	10.0	5	80	10	50	18	6	0	76	0.99
576520--576548	14	2.0	15	93	6	51	20	3	0	75	0.94
576522--576565	21	2.0	23	86	8	65	20	9	0	70	1.14
579141--579400	95	2.7	95	81	6	274	32	15	18	33	1.93
580522--582157	84	19.5	83	81	3	1520	35	23	17	23	1.95
580522--582157	168	9.7	168	81	4	1681	35	23	17	23	1.95
580522--582157	504	3.2	500	83	3	1935	35	23	17	23	1.95
582723--582800	41	1.9	41	81	5	95	48	3	3	43	1.39
585245--585281	3	13.0	3	86	11	51	35	0	2	62	1.10
585248--585274	14	1.9	14	100	0	54	37	0	3	59	1.15
585250--585282	17	1.9	17	93	0	57	36	0	3	60	1.12
586479--586528	17	2.9	18	83	16	70	16	6	0	78	0.95
586489--586528	18	2.3	18	91	4	64	15	7	0	77	0.98
586439--586528	33	3.0	28	72	21	85	15	8	2	73	1.18
598573--598611	18	2.2	17	86	4	51	28	2	2	66	1.18
598574--598682	49	2.2	50	85	3	141	30	3	6	59	1.40
600493--600528	18	2.0	18	100	0	72	22	11	5	61	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602078--602121	3	15.0	3	81	13	56	34	0	2	63	1.07
603434--603519	37	2.5	34	85	9	104	47	11	3	37	1.57
603793--603865	15	4.8	15	79	15	62	0	30	0	69	0.88
603792--603865	19	3.8	20	74	20	61	0	31	0	68	0.89
603792--603870	17	4.6	17	75	16	65	1	31	0	67	0.99
605019--605062	23	2.0	23	90	4	72	34	11	2	52	1.50
607186--607211	11	2.4	11	100	0	52	92	0	7	0	0.39
614513--614608	40	2.4	40	85	0	138	45	17	14	21	1.84
614513--614603	20	4.6	20	77	2	85	45	17	15	21	1.86
614702--614754	20	2.7	20	84	0	79	39	20	20	18	1.92
614553--614841	146	2.0	146	90	0	461	36	20	16	26	1.93
614884--615023	20	6.9	21	74	9	89	40	21	15	22	1.91
614906--615001	40	2.4	40	92	0	156	42	17	16	22	1.88
615056--615104	20	2.5	20	89	0	80	38	20	22	18	1.93
615125--615162	20	1.9	20	94	0	67	44	15	18	21	1.86
628751--628811	27	2.3	27	94	0	113	40	9	21	27	1.85
629058--629277	95	2.3	95	88	1	316	30	17	26	26	1.97
629602--630049	54	8.3	54	88	2	596	28	17	20	33	1.95
630838--630862	13	1.9	13	100	0	50	4	32	0	64	1.12
632142--632209	23	3.0	23	80	0	64	20	23	25	30	1.98
635034--635059	10	2.6	10	100	0	52	7	30	0	61	1.24
636297--636354	23	2.5	23	88	0	80	18	29	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637686--638103	138	3.1	137	87	3	569	29	12	17	40	1.87
638049--638151	53	1.9	53	88	0	152	29	13	18	38	1.89
643135--643241	34	3.1	35	78	10	121	41	8	10	40	1.69
643135--643241	17	6.2	17	72	7	81	41	8	10	40	1.69
649668--649717	26	1.9	26	100	0	100	56	22	4	18	1.58
661613--661751	61	2.3	60	86	6	183	41	4	6	47	1.49
661625--661757	14	9.1	14	68	16	65	42	4	6	46	1.48
661639--661771	29	4.6	28	77	13	112	42	3	6	48	1.43
661728--661847	26	4.8	26	74	14	99	43	3	6	46	1.46
661978--662023	13	3.7	13	82	11	60	47	4	2	45	1.34

Tables:   1   2   3   4   5