genome.fa.s7711.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007711.1 Hibiscus syriacus cultivar Beakdansim tig00109926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1768490

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 857 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215583--215676	37	2.5	37	87	3	127	29	12	15	41	1.85
216009--216047	20	2.0	20	85	5	53	28	12	0	58	1.34
216162--216198	16	2.2	17	95	4	67	16	32	0	51	1.45
218693--218747	22	2.4	24	76	11	62	18	20	9	52	1.71
218701--218753	22	2.4	22	84	9	72	15	16	11	56	1.67
221060--221146	42	2.1	42	95	0	156	48	16	10	25	1.77
227012--227036	2	12.5	2	100	0	50	48	0	0	52	1.00
232378--232484	56	1.9	54	84	3	142	44	24	11	19	1.83
236575--236626	21	2.5	21	81	3	61	38	19	25	17	1.93
236615--236708	20	4.7	20	77	7	82	31	24	19	24	1.98
237264--237305	19	2.2	19	91	0	66	52	26	16	4	1.63
237301--237390	19	4.7	19	93	2	153	11	20	22	46	1.81
237301--237390	39	2.3	38	94	1	153	11	20	22	46	1.81
237320--237401	39	2.1	39	86	6	114	8	20	26	43	1.80
237363--237435	32	2.2	32	82	2	92	9	20	27	42	1.83
237413--237449	14	2.6	14	95	0	65	8	24	24	43	1.81
237381--237473	46	2.0	48	87	4	136	9	24	25	39	1.86
237441--237498	20	2.9	20	80	10	64	13	24	18	43	1.87
239506--239585	42	1.9	42	84	0	106	21	38	17	22	1.93
240982--241017	14	2.6	14	86	0	54	33	0	22	44	1.53
241176--241306	19	7.7	19	65	23	85	15	22	19	43	1.87
241180--241306	33	3.9	32	84	8	175	15	22	18	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241173--241305	66	2.0	66	94	0	230	17	21	18	42	1.90
243599--243623	12	2.1	12	100	0	50	0	28	0	72	0.86
243798--243851	24	2.2	24	90	0	81	38	20	16	24	1.92
244908--244965	20	2.9	20	94	0	98	37	22	22	17	1.93
245007--245051	19	2.4	19	100	0	90	15	20	15	48	1.80
245168--245204	14	2.6	14	86	0	56	48	21	0	29	1.50
247124--247181	14	3.9	14	79	16	71	10	17	24	48	1.78
247107--247197	32	2.8	33	93	3	157	13	18	20	47	1.82
247182--247225	20	2.2	20	88	4	63	18	22	20	38	1.93
247718--247762	18	2.5	18	88	0	72	13	15	44	26	1.83
249082--249140	20	3.0	20	87	0	73	42	22	18	16	1.89
249402--249445	22	2.0	22	95	0	79	18	15	45	20	1.85
249633--249746	20	5.7	20	80	6	113	24	17	26	31	1.97
249617--249748	41	3.2	41	77	6	142	24	16	25	34	1.96
249736--249828	20	4.5	21	75	4	91	17	22	18	41	1.90
249675--249809	41	3.3	40	79	6	119	19	20	21	39	1.93
249736--249828	41	2.3	41	96	0	168	17	22	18	41	1.90
251379--251406	3	9.3	3	100	0	56	32	0	0	67	0.91
254185--254222	7	5.4	7	100	0	76	26	28	28	15	1.96
254219--254276	5	10.8	5	78	14	62	6	22	51	18	1.70
254212--254276	22	3.0	22	100	0	130	9	23	49	18	1.76
254273--254351	19	4.2	18	78	16	88	27	29	29	13	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254298--254372	29	2.5	31	89	8	120	29	26	26	17	1.97
254273--254371	9	10.3	9	80	10	90	29	27	28	15	1.96
261532--261569	7	5.4	7	100	0	76	26	28	28	15	1.96
261566--261623	5	10.8	5	76	20	55	8	20	51	18	1.72
261559--261623	22	3.0	22	97	0	121	10	21	49	18	1.78
261620--261698	19	4.2	18	78	16	88	27	29	29	13	1.95
261645--261719	29	2.5	31	89	8	120	29	26	26	17	1.97
261620--261718	9	10.3	9	80	10	90	29	27	28	15	1.96
264693--264741	22	2.3	22	85	3	64	51	12	6	30	1.64
268638--268698	18	3.4	18	77	4	61	27	3	1	67	1.16
268883--268952	34	2.0	34	86	8	95	24	41	4	30	1.74
288762--288812	22	2.3	23	80	12	63	49	0	1	49	1.12
289789--289880	20	4.6	20	85	5	123	23	19	16	40	1.91
289921--289990	21	3.3	21	71	15	72	21	17	21	40	1.92
290099--290131	6	5.5	6	92	0	57	33	48	18	0	1.48
290613--290640	9	3.1	9	100	0	56	0	57	32	10	1.33
290757--290828	21	3.4	21	94	0	126	43	15	18	23	1.88
290750--290847	42	2.3	40	81	10	124	38	17	19	24	1.92
294323--294380	30	1.9	30	89	6	91	48	3	17	31	1.64
294388--294434	20	2.1	23	85	14	64	44	0	2	53	1.12
305206--305249	13	3.2	13	76	17	52	40	0	13	45	1.44
305856--305897	7	5.9	7	97	2	75	42	2	54	0	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309635--309734	34	3.0	32	86	8	128	30	16	23	31	1.96
317359--317400	12	3.6	12	83	6	59	11	14	45	28	1.80
317398--317460	24	2.6	25	78	16	71	44	0	0	55	0.99
320530--320576	25	1.9	24	83	12	60	21	6	14	57	1.60
324614--324659	23	2.0	23	86	0	65	56	0	2	41	1.11
326067--326209	60	2.4	59	80	4	144	39	12	13	34	1.83
332085--332257	19	8.8	21	84	6	107	40	23	11	24	1.88
332135--332230	19	4.9	19	92	2	147	38	22	10	28	1.87
332099--332238	38	3.5	39	83	5	165	40	23	10	25	1.86
332388--332427	16	2.5	16	83	0	53	27	5	0	67	1.11
333139--333216	24	3.2	24	92	0	129	21	19	19	39	1.92
335754--335790	14	2.6	14	91	0	65	48	18	0	32	1.49
337214--337316	42	2.5	42	78	0	116	24	18	33	24	1.97
337214--337312	21	4.7	21	71	13	69	24	19	32	24	1.97
339357--339410	20	2.7	19	83	8	72	46	22	16	14	1.84
342522--342615	48	2.0	48	82	4	118	27	27	14	29	1.96
342570--342839	55	5.0	55	86	7	367	31	25	14	28	1.95
342493--342839	110	3.3	108	81	12	362	29	25	15	28	1.96
342854--342925	37	2.0	36	91	2	117	18	22	22	37	1.94
344207--344382	17	10.3	16	70	21	67	8	17	0	73	1.10
344207--344373	9	19.2	9	69	22	51	8	16	0	74	1.09
344264--344316	19	2.7	19	82	8	54	7	16	1	73	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344214--344364	8	18.8	8	71	21	70	9	15	0	74	1.11
344245--344380	10	14.0	9	67	19	51	8	15	0	75	1.09
347714--347746	17	1.9	17	88	11	50	54	0	21	24	1.45
352487--352614	20	6.4	20	76	12	138	19	17	21	41	1.90
352540--352625	39	2.2	40	93	2	147	18	16	24	40	1.90
352487--352613	60	2.1	60	87	7	179	19	17	22	40	1.91
352619--352665	20	2.3	20	89	7	69	25	17	21	36	1.94
352540--352645	39	2.7	39	86	7	117	20	16	22	39	1.92
353488--353565	23	3.4	22	73	15	68	62	12	6	17	1.50
354688--354720	16	2.1	16	100	0	66	57	24	12	6	1.57
354787--354859	10	7.5	10	71	22	66	58	21	10	8	1.58
354781--354853	16	4.7	16	89	3	114	60	21	9	8	1.54
355606--355661	14	4.3	14	80	17	75	51	23	14	10	1.73
355586--355660	24	3.1	24	90	3	107	54	20	12	13	1.70
355599--355646	10	4.4	10	78	19	51	54	22	12	10	1.68
366710--366791	40	2.0	40	95	0	146	28	18	19	34	1.95
377963--378068	32	3.4	31	75	11	108	49	9	4	36	1.56
377969--378088	64	1.9	63	82	5	152	48	10	4	36	1.58
383567--383625	17	3.4	16	72	22	57	23	15	16	44	1.86
383567--383671	35	3.0	35	92	0	174	22	15	19	42	1.88
385303--385489	93	2.0	93	96	0	347	33	25	12	28	1.93
389414--389730	162	2.0	156	86	10	448	41	9	16	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389751--389811	31	2.0	31	100	0	122	36	9	9	44	1.71
392142--392182	20	2.0	20	100	0	82	29	19	9	41	1.83
393016--393041	12	2.2	12	100	0	52	46	0	0	53	1.00
394322--394401	36	2.2	36	88	2	115	41	11	3	43	1.58
399572--399603	16	2.0	16	100	0	64	31	18	12	37	1.88
399709--399737	15	1.9	15	100	0	58	51	13	20	13	1.75
399914--399949	6	5.8	6	90	3	54	36	16	33	13	1.89
405163--405188	3	8.7	3	100	0	52	0	30	0	69	0.89
410687--410732	12	3.6	12	81	16	56	45	17	19	17	1.85
410693--410733	12	3.1	13	80	19	57	46	14	17	21	1.84

Tables:   1   2   3   4   5   6   7   8