Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007711.1 Hibiscus syriacus cultivar Beakdansim tig00109926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1768490

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 857 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1729572--1729636
33
1.9
34
90
3
105
18
9
29
43
1.81
1730209--1730239
16
1.9
16
100
0
62
29
32
6
32
1.83
1732914--1732947
2
17.0
2
100
0
68
50
0
0
50
1.00
1734034--1734067
2
17.0
2
100
0
68
50
0
0
50
1.00
1735581--1735673
34
2.7
34
89
0
132
24
31
16
27
1.96
1736790--1736828
19
2.1
19
95
0
69
20
38
15
25
1.92
1736727--1736935
65
3.2
63
83
8
217
29
26
17
26
1.97
1736776--1736936
65
2.5
65
86
3
218
30
26
16
26
1.96
1736727--1736956
64
3.6
64
81
6
225
29
26
17
26
1.98
1742732--1742787
22
2.7
21
83
10
62
30
23
17
28
1.97
1744318--1744361
21
2.1
21
82
0
52
9
34
15
40
1.79
1745391--1745429
19
2.1
19
95
0
69
20
38
15
25
1.92
1745377--1745537
65
2.5
65
86
3
218
30
26
16
26
1.96
1745329--1745557
64
3.5
64
81
6
223
29
26
17
26
1.98
1746348--1746389
17
2.6
16
81
7
50
21
28
23
26
1.99
1765182--1765343
86
1.9
86
80
3
193
37
10
4
46
1.60
1766642--1766679
3
12.3
3
94
5
67
34
0
0
65
0.93

Tables:   1   2   3   4   5   6   7   8

The End!