genome.fa.s7712.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007712.1 Hibiscus syriacus cultivar Beakdansim tig00109936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  920388

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 536 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355893--356197	131	2.3	130	87	2	432	23	21	15	39	1.92
356204--356566	131	2.7	132	83	3	435	26	31	19	23	1.98
356742--356767	3	8.7	3	100	0	52	34	0	0	65	0.93
376382--376481	24	4.2	24	71	5	76	48	17	13	22	1.81
376380--376483	48	2.2	48	80	0	118	49	16	13	21	1.79
383593--383647	21	2.7	19	81	13	65	47	16	1	34	1.57
384360--384393	17	2.0	17	88	11	52	41	8	0	50	1.34
391171--391208	15	2.4	16	86	8	51	47	0	0	52	1.00
392165--392345	60	3.0	59	75	8	193	48	3	17	30	1.64
392374--392544	60	2.8	61	82	7	188	29	21	4	44	1.72
405870--406183	51	6.0	51	88	5	389	28	26	14	29	1.95
407497--407559	17	3.4	20	67	24	57	9	9	0	80	0.89
407497--407661	11	15.1	10	68	21	50	7	13	0	78	0.99
407508--407658	8	18.2	8	70	19	71	7	13	0	78	1.00
407496--407658	9	17.3	9	67	18	66	7	14	0	77	1.00
417217--417294	41	1.9	41	85	12	108	29	33	6	30	1.83
417305--417400	45	2.1	46	86	7	133	38	20	11	29	1.88
417834--417858	13	1.9	13	100	0	50	64	24	0	12	1.27
421408--421602	45	4.4	45	68	15	156	27	22	22	28	1.99
421317--421740	130	3.2	131	85	3	523	28	20	21	30	1.98
422469--422521	19	2.8	19	91	0	79	43	7	16	32	1.76
422471--422535	19	3.4	19	86	0	67	40	7	18	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423901--423927	14	1.9	14	100	0	54	37	3	22	37	1.72
425325--425377	21	2.5	21	78	0	61	20	24	18	35	1.95
425367--425453	20	4.3	20	82	5	113	39	20	19	20	1.93
425367--425453	41	2.2	40	91	2	138	39	20	19	20	1.93
425382--425463	20	4.1	20	80	9	67	37	19	20	21	1.94
426314--426360	24	2.0	24	95	0	85	21	21	21	36	1.96
428797--428885	20	4.4	20	91	2	144	34	25	22	16	1.95
428857--428952	33	2.8	33	87	3	129	41	19	23	14	1.89
428890--428957	19	3.8	19	72	21	74	45	17	22	14	1.85
428969--429062	33	2.8	34	83	3	118	13	23	20	42	1.88
429164--429200	14	2.6	14	86	0	56	48	21	0	29	1.50
430555--430665	42	2.6	42	77	8	125	23	18	37	19	1.94
431145--431266	20	6.4	20	75	11	96	40	20	20	18	1.92
431314--431434	20	6.3	20	79	11	137	19	18	21	40	1.91
431290--431434	74	2.0	74	91	0	236	18	18	20	42	1.90
431290--431411	34	3.4	34	77	12	127	18	19	20	41	1.90
433321--433370	20	2.5	20	90	0	73	36	28	18	18	1.94
433341--433413	33	2.2	34	85	7	96	39	26	20	13	1.90
433975--434030	21	2.7	21	83	5	69	35	17	25	21	1.95
436049--436084	19	1.9	18	88	5	54	50	0	2	47	1.15
438718--438770	25	2.1	25	100	0	106	20	15	7	56	1.63
447836--447897	13	4.8	13	91	0	88	32	19	14	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448059--448087	2	14.5	2	100	0	58	48	0	0	51	1.00
452918--452945	14	2.0	14	100	0	56	35	21	7	35	1.81
452997--453031	16	2.2	16	94	0	61	71	0	25	2	1.00
474638--474678	18	2.3	18	87	8	57	43	19	4	31	1.72
483473--483536	31	2.1	31	82	5	76	26	12	9	51	1.70
486518--486558	21	2.0	21	95	0	73	24	21	24	29	1.99
487325--487461	37	4.0	31	84	11	98	35	21	17	25	1.95
487358--487461	37	2.8	37	95	0	181	34	20	18	26	1.95
489057--489098	21	2.0	21	90	0	66	30	26	19	23	1.98
489212--489268	15	3.5	15	72	25	53	19	21	36	22	1.95
489224--489282	15	3.4	17	68	27	52	16	27	35	20	1.94
489211--489294	34	2.4	34	96	2	150	17	23	35	22	1.95
489261--489321	21	3.0	21	88	7	90	14	29	36	19	1.92
491269--491320	3	17.3	3	89	0	77	1	26	1	69	1.10
492315--492384	34	2.1	32	86	5	95	22	31	14	31	1.94
492666--492707	21	2.0	21	95	0	75	26	28	21	23	1.99
492821--492877	15	3.5	15	72	25	53	21	24	35	19	1.96
492836--492928	20	5.0	19	69	18	70	18	26	32	22	1.97
492820--492903	34	2.5	33	92	5	141	19	26	33	21	1.97
492836--492928	19	5.0	19	68	13	68	18	26	32	22	1.97
502062--502106	19	2.4	19	84	0	63	17	26	33	22	1.96
518107--518181	37	2.0	37	82	10	91	49	4	1	45	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520334--520367	18	1.9	18	88	5	52	47	11	17	23	1.81
523468--523511	17	2.7	17	80	19	58	56	0	2	40	1.11
524224--524258	2	17.5	2	100	0	70	51	0	0	48	1.00
526760--526802	21	2.0	21	86	0	59	30	27	25	16	1.97
526782--526931	67	2.2	68	87	5	216	28	26	26	18	1.98
527235--527306	29	2.5	29	90	0	108	38	9	13	37	1.78
527320--527396	30	2.5	30	91	2	118	40	5	23	31	1.76
527611--527673	13	5.5	13	65	27	52	19	26	26	26	1.99
527607--527687	22	3.6	22	96	1	144	18	27	29	24	1.98
533728--533770	21	2.0	21	86	0	59	30	27	25	16	1.97
533750--533898	67	2.2	67	89	4	230	28	26	26	18	1.98
533863--533900	20	1.9	20	88	0	58	23	34	31	10	1.89
534202--534273	29	2.5	29	90	0	108	38	9	13	37	1.78
534287--534363	30	2.5	30	91	2	118	40	5	23	31	1.76
534578--534640	13	5.5	13	65	27	52	19	26	26	26	1.99
534574--534641	22	3.1	22	97	0	127	19	26	29	25	1.98
536312--536361	20	2.6	21	81	15	63	32	18	24	26	1.97
536388--536443	22	2.7	21	76	15	62	46	17	14	21	1.84
540327--540386	30	2.0	30	93	0	102	38	15	18	28	1.91
546500--546566	31	2.2	31	94	5	118	20	7	17	53	1.68
549404--549437	2	17.0	2	90	0	50	44	2	0	52	1.16
550003--550202	100	2.0	100	100	0	400	30	18	26	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550187--550287	49	2.1	49	98	0	193	28	18	33	18	1.95
550500--550590	26	3.4	27	95	4	168	41	0	4	53	1.21
554227--554276	20	2.5	20	78	15	57	38	0	14	48	1.44
560895--560945	23	2.2	23	96	0	93	37	11	31	19	1.88
562598--562709	53	2.1	53	98	0	215	33	10	5	50	1.60
564958--565115	31	5.1	31	74	11	128	43	18	8	28	1.80
565333--565465	68	2.0	67	98	1	257	21	18	8	51	1.72
565646--565831	72	2.7	70	85	6	227	46	14	9	29	1.76
565671--565831	72	2.2	72	89	0	250	45	14	10	29	1.78
568231--568255	12	2.1	12	100	0	50	44	0	16	40	1.47
575071--575111	8	5.2	8	82	5	57	34	0	29	36	1.58
575179--575908	126	5.8	126	97	0	1367	22	25	19	32	1.97
576295--576389	30	3.0	34	74	14	103	38	3	4	53	1.36
576909--576981	21	3.5	21	87	10	105	21	27	32	17	1.96
576985--577032	21	2.3	21	85	0	60	22	12	39	25	1.89
578753--578839	34	2.7	31	77	10	86	59	2	0	37	1.10
578781--578843	19	3.6	18	71	16	53	63	3	0	33	1.10
578787--578862	34	2.2	33	80	15	84	65	5	0	28	1.14
580257--580292	16	2.2	17	90	9	58	52	5	0	41	1.24
584638--584663	13	2.0	13	100	0	52	23	38	15	23	1.92
586852--587041	98	1.9	98	91	0	308	40	10	11	37	1.75
589358--589397	3	13.7	3	94	5	73	70	0	0	30	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589708--589766	26	2.3	26	90	0	91	35	13	8	42	1.75
590120--590183	4	17.0	4	72	23	50	70	1	4	23	1.15
590122--590173	7	7.3	7	78	4	59	71	1	3	23	1.13
595907--595967	29	2.1	30	84	9	81	31	1	1	65	1.12
595915--595961	18	2.4	20	86	10	62	31	0	2	65	1.04
597841--597893	21	2.4	21	78	6	52	30	18	5	45	1.73
598501--598661	64	2.5	64	79	6	173	23	23	18	34	1.96
601582--601619	18	2.1	19	85	5	51	23	21	2	52	1.59
602677--602732	20	2.6	20	86	11	67	25	21	19	33	1.97
602787--602835	19	2.6	19	86	0	71	24	28	14	32	1.94

Tables:   1   2   3   4   5