genome.fa.s7712.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007712.1 Hibiscus syriacus cultivar Beakdansim tig00109936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  920388

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 536 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616651--616692	21	2.0	20	86	4	57	21	7	23	47	1.75
618246--618306	22	2.7	22	74	20	63	55	8	3	32	1.45
618289--618319	16	1.9	16	93	0	53	51	6	0	41	1.27
618664--618756	36	2.6	34	82	11	107	23	6	8	61	1.48
618775--618972	83	2.4	84	82	5	222	24	19	8	46	1.78
618766--618966	42	4.8	41	81	6	206	23	19	8	47	1.78
621380--621429	25	2.0	26	92	4	84	10	44	24	22	1.83
629088--629242	21	7.4	21	73	16	133	20	20	23	34	1.96
629094--629316	42	5.3	42	89	3	331	21	20	22	35	1.96
629094--629316	86	2.6	84	92	2	349	21	20	22	35	1.96
629069--629319	42	6.0	42	85	5	321	22	20	21	35	1.96
629095--629326	128	1.8	126	89	3	367	22	20	21	34	1.97
629931--629973	6	7.5	6	97	2	72	0	16	53	30	1.43
630109--630179	21	2.9	27	68	24	73	26	22	21	29	1.99
630132--630231	21	4.8	21	83	4	130	26	25	22	27	2.00
630132--630256	42	3.0	41	78	8	137	25	24	20	29	1.99
630240--630479	21	11.6	21	75	11	208	23	21	22	32	1.98
630221--630314	41	2.3	41	98	0	179	23	23	20	32	1.97
630240--630459	62	3.5	62	81	7	252	24	21	21	32	1.98
630281--630479	83	2.4	83	90	0	317	23	21	23	31	1.98
633745--633810	33	2.0	33	88	5	98	28	15	25	30	1.96
635918--636248	79	4.3	79	80	5	345	33	20	17	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641242--641379	50	2.8	50	95	1	251	16	35	31	15	1.91
641577--641662	35	2.4	35	81	14	97	39	0	2	58	1.11
641804--641857	17	3.2	17	72	0	54	31	0	3	64	1.11
643147--643225	34	2.4	33	83	8	90	39	0	1	59	1.06
643365--643418	17	3.2	17	72	0	54	31	0	3	64	1.11
644464--644602	50	2.8	50	91	0	224	15	35	32	17	1.91
644806--644884	33	2.4	30	81	12	86	39	0	1	59	1.06
645023--645076	17	3.2	17	72	0	54	31	0	3	64	1.11
646594--646635	21	2.0	21	90	0	66	26	40	11	21	1.88
646639--646753	21	5.5	21	83	8	135	19	30	25	25	1.98
647273--647351	28	2.8	28	88	5	106	54	2	2	40	1.27
647276--647367	28	2.9	33	75	18	95	55	3	3	38	1.32
647293--647374	34	2.4	34	85	2	101	54	3	3	37	1.35
647770--648374	128	4.7	128	95	0	1075	33	21	24	21	1.97
648457--648497	8	5.2	8	82	5	57	36	29	0	34	1.58
656862--656908	24	1.9	25	82	4	60	51	4	0	44	1.21
662264--662308	21	2.1	21	100	0	90	17	4	33	44	1.69
662321--662398	32	2.8	26	70	20	75	28	3	23	44	1.70
662340--662400	32	1.9	32	93	0	104	26	4	22	45	1.72
662412--662708	70	4.3	70	88	4	419	28	4	27	39	1.76
662698--662741	22	2.0	22	95	0	79	40	2	11	45	1.53
662844--662901	15	4.0	15	86	8	84	58	6	3	31	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662837--662900	15	4.5	14	83	11	76	62	6	3	28	1.34
662841--662899	28	2.1	28	93	0	100	62	6	3	27	1.36
662941--663047	56	1.9	56	94	0	187	58	0	5	34	1.28
663001--663064	34	1.9	33	81	15	78	54	0	6	39	1.26
669343--669374	12	2.7	12	95	0	55	68	9	3	18	1.30
670322--670375	25	2.2	25	78	18	60	51	0	3	44	1.19
670319--670374	24	2.4	24	80	16	64	53	0	3	42	1.18
670337--670392	24	2.3	24	78	3	58	51	1	1	44	1.22
677004--677076	24	3.0	24	86	6	85	36	17	28	16	1.92
677496--677864	184	2.0	182	92	3	607	32	14	15	36	1.89
679683--679730	16	3.1	14	83	16	60	60	0	0	39	0.97
679683--679733	18	3.2	16	86	10	61	60	0	0	39	0.97
679888--679919	4	8.0	4	92	0	55	28	0	0	71	0.86
680204--680261	21	2.8	21	70	19	57	34	18	20	25	1.96
686749--686799	7	7.3	7	100	0	102	45	0	0	54	0.99
687525--687575	25	2.0	25	88	0	75	41	11	11	35	1.78
688330--688355	2	13.0	2	100	0	52	50	0	0	50	1.00
688930--688960	2	15.5	2	100	0	62	48	0	0	51	1.00
689207--689329	61	2.0	61	98	0	237	29	19	12	39	1.88
697667--697891	111	2.0	111	99	0	441	34	3	8	54	1.45
697700--697935	111	2.1	111	82	6	273	35	6	8	50	1.58
698584--698637	21	2.6	21	96	0	99	24	18	29	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
698670--698736	19	3.5	19	97	0	125	19	19	17	43	1.89
698670--698751	38	2.2	38	86	4	112	21	18	19	40	1.92
698723--698763	19	2.2	19	86	0	55	39	9	21	29	1.86
698836--698874	6	6.5	6	100	0	78	33	51	15	0	1.44
699386--699425	6	6.7	6	100	0	80	0	17	50	32	1.47
699523--699573	22	2.3	22	96	0	93	37	25	17	19	1.94
699564--699783	41	5.4	41	96	0	395	37	24	19	18	1.94
699576--699812	123	1.9	122	88	0	330	37	24	18	19	1.94
701400--701463	21	2.8	23	81	9	60	28	15	25	31	1.96
701568--701613	24	1.9	24	90	0	74	56	2	2	39	1.24
701966--702031	25	2.6	25	85	0	87	33	9	10	46	1.70
703089--703258	85	2.0	85	96	0	313	31	7	9	51	1.62
707001--707067	32	2.1	33	88	2	100	14	8	41	34	1.78
710187--710233	2	23.5	2	100	0	94	51	0	0	48	1.00
713251--713317	3	22.7	3	96	3	127	68	0	31	0	0.90
713848--713930	29	2.8	29	92	1	139	43	9	14	32	1.78
718618--718700	29	2.8	29	92	1	139	43	9	14	32	1.78
722803--722914	29	3.9	29	83	0	143	37	15	25	22	1.93
722793--722924	58	2.3	58	85	1	176	39	14	25	21	1.91
725126--725173	20	2.4	20	79	6	53	41	16	20	20	1.90
726865--726947	13	6.8	13	73	17	72	31	34	3	30	1.75
726862--726966	36	2.9	36	90	1	167	30	34	4	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732592--732671	13	6.8	12	69	26	55	32	36	2	28	1.71
732567--732671	36	2.9	36	91	1	167	30	36	4	28	1.78
738937--739028	13	6.8	13	76	13	71	34	1	3	60	1.20
741438--741471	6	5.5	6	86	6	50	44	0	5	50	1.26
742359--742389	14	2.2	14	94	0	53	32	0	6	61	1.21
744311--744393	6	13.8	6	75	5	51	33	3	46	15	1.63
744326--744393	30	2.3	30	84	5	84	33	4	42	19	1.71
747025--747140	60	1.9	60	82	0	142	26	21	18	32	1.97
748359--748414	21	2.5	24	85	8	73	51	26	3	17	1.62
748809--748864	29	2.0	28	82	10	69	37	0	1	60	1.07
750204--750262	28	2.1	27	87	3	82	23	20	1	54	1.54
752844--752889	23	2.0	23	83	8	58	63	0	0	36	0.95
769838--769883	3	16.3	3	86	13	71	69	0	0	30	0.89
769838--769883	14	3.3	14	90	6	67	69	0	0	30	0.89
771851--771933	24	3.5	24	98	0	157	36	12	32	19	1.88
775015--775080	23	2.8	23	88	2	96	30	18	22	28	1.97
775011--775089	23	3.4	23	84	5	88	30	22	20	26	1.98
777221--777295	39	1.9	38	84	12	100	36	10	17	36	1.84
777344--777435	31	3.0	31	90	0	139	26	18	18	36	1.94
777956--778015	22	2.8	22	83	14	81	25	21	30	23	1.99
780167--780227	31	2.0	31	90	0	95	24	19	18	37	1.94
780836--780885	20	2.6	19	83	3	55	36	18	8	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
781310--781355	18	2.6	18	93	3	76	21	19	8	50	1.75
784775--784814	20	2.2	20	86	13	59	52	2	0	45	1.14
784908--784949	19	2.2	19	83	8	50	38	0	2	59	1.10
784908--784950	20	2.3	19	80	11	52	39	0	2	58	1.11
785383--785407	2	12.5	2	100	0	50	48	0	0	52	1.00
785683--785732	2	25.0	2	100	0	100	50	0	0	50	1.00
786781--786846	21	3.0	21	73	4	60	27	12	21	39	1.88
786850--786916	35	1.9	35	84	0	89	25	14	25	34	1.94
788090--788158	25	2.7	27	78	17	85	39	7	0	53	1.29
788092--788177	26	3.4	25	80	15	90	39	5	0	54	1.24

Tables:   1   2   3   4   5