genome.fa.s7712.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007712.1 Hibiscus syriacus cultivar Beakdansim tig00109936_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  920388

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 536 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
788088--788188	26	4.0	24	76	21	73	39	5	0	54	1.25
795429--795491	32	2.0	32	96	0	117	39	12	14	33	1.84
797836--797868	14	2.4	14	89	0	57	51	15	9	24	1.72
799641--799747	49	2.2	49	88	5	153	47	10	0	41	1.44
808060--808126	20	3.3	20	95	0	116	23	22	5	47	1.73
813203--813296	43	2.2	44	84	3	120	47	20	8	23	1.77
814982--815085	3	34.7	3	94	0	181	34	1	0	63	1.06
815559--815597	20	2.0	20	100	0	78	71	5	23	0	1.05
817198--817249	20	2.6	21	76	11	56	28	5	0	65	1.16
824213--824438	114	2.0	114	91	0	371	32	15	21	30	1.95
826443--826572	50	2.6	50	87	2	190	36	15	18	29	1.91
827399--828526	113	10.0	113	92	2	1587	37	14	19	28	1.91
828844--828944	3	33.7	3	95	0	184	34	0	0	64	1.00
828940--828969	11	2.8	11	95	5	53	56	0	0	43	0.99
829403--829439	19	1.9	19	100	0	74	70	5	24	0	1.08
840884--840910	13	2.1	13	100	0	54	22	14	22	40	1.90
847935--848007	19	3.5	21	72	20	64	63	2	2	31	1.23
850792--850849	10	5.6	10	76	11	55	22	3	5	68	1.24
850792--850849	21	2.8	21	75	15	57	22	3	5	68	1.24
859013--859071	31	1.9	31	86	3	84	22	10	13	54	1.69
860306--860364	13	4.4	14	74	16	54	50	0	0	49	1.00
862203--862712	270	1.9	270	99	0	1002	31	10	12	45	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
863633--863679	21	2.2	21	84	0	67	19	27	17	36	1.93
863675--863747	20	3.7	20	90	0	110	36	21	20	20	1.95
864336--864384	20	2.5	20	82	0	62	36	24	18	20	1.94
864426--864475	20	2.5	20	90	0	73	18	18	28	36	1.94
864443--864497	20	2.8	20	91	0	83	10	16	23	49	1.77
864462--864505	20	2.2	20	87	0	61	13	13	20	52	1.74
866359--866462	20	5.5	20	78	13	121	39	22	19	19	1.93
866362--866500	54	2.6	54	89	1	199	40	20	20	17	1.92
866490--866628	73	1.9	73	92	0	233	20	20	19	40	1.92
866509--866645	20	7.2	20	73	9	108	21	18	18	40	1.91
867136--867239	21	5.0	19	70	16	64	21	35	19	24	1.96
867133--867243	42	2.6	42	78	10	120	21	36	18	23	1.94
870264--870317	24	2.2	24	90	0	81	42	18	18	20	1.89
871158--871285	40	3.2	38	75	17	109	22	20	21	35	1.96
871177--871285	41	2.7	40	85	4	148	21	21	21	36	1.95
871179--871285	20	5.3	20	84	4	144	21	20	20	37	1.95
871282--871327	21	2.2	21	88	0	65	36	17	28	17	1.92
883656--884201	250	2.2	251	92	2	895	23	11	22	42	1.86
884200--884239	2	20.0	2	100	0	80	50	0	0	50	1.00
895095--895122	5	5.6	5	100	0	56	0	39	0	60	0.97
895092--895128	15	2.5	14	87	12	56	0	37	0	62	0.96
896104--896188	42	2.0	42	95	0	152	54	2	9	34	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898621--898670	20	2.5	20	90	0	73	32	14	22	32	1.93
900042--900096	9	6.0	9	72	19	51	45	0	0	54	0.99
900048--900088	22	1.9	21	85	5	55	43	0	0	56	0.99
900405--900453	16	2.9	18	73	14	59	44	12	20	22	1.84
900653--900729	31	2.5	31	89	0	109	44	12	16	25	1.84
901003--901050	2	24.0	2	95	0	87	47	0	0	52	1.00
908560--908616	30	1.9	30	92	0	96	26	15	19	38	1.92
908572--908641	30	2.3	30	87	0	95	22	12	20	44	1.85
919675--919766	21	4.6	20	78	6	96	39	17	25	18	1.92
919672--919766	40	2.3	41	96	1	174	40	16	24	18	1.91
919694--919827	41	3.3	41	80	7	114	38	20	21	20	1.94
919755--919848	20	4.7	20	80	2	89	34	24	18	23	1.96

Tables:   1   2   3   4   5

The End!