genome.fa.s7718.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007718.1 Hibiscus syriacus cultivar Beakdansim tig00109949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1062497

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348280--348313	12	2.8	12	90	4	50	17	8	17	55	1.66
348828--348974	46	3.2	46	75	6	136	28	16	17	38	1.91
355598--355760	46	3.5	46	79	1	157	28	17	21	32	1.96
356580--356697	55	2.2	55	81	4	141	38	11	15	35	1.83
356872--357257	67	5.8	68	88	4	558	28	14	26	30	1.95
357446--357787	45	7.7	45	85	2	449	37	11	23	27	1.89
357817--357871	28	2.0	29	85	7	78	63	1	18	16	1.39
358108--358497	68	5.8	67	91	2	568	30	13	25	30	1.94
358686--359032	45	7.7	45	87	0	469	37	11	23	27	1.90
358640--359024	90	4.3	89	84	3	380	38	11	23	26	1.89
360618--360654	19	1.9	19	100	0	74	32	21	24	21	1.98
360638--360793	65	2.4	64	86	1	213	29	19	21	28	1.98
363858--363900	9	4.4	9	86	13	59	86	9	4	0	0.71
375231--375267	19	1.9	19	88	0	56	27	24	24	24	2.00
375251--375406	65	2.4	64	87	3	206	30	19	21	29	1.97
380580--381074	131	3.8	130	79	7	527	39	13	11	35	1.81
380572--381066	261	1.9	263	82	5	637	39	13	11	35	1.81
383149--383180	13	2.6	12	95	5	55	75	0	0	25	0.81
383143--383183	19	2.3	17	87	8	55	78	0	0	21	0.76
383350--383923	134	4.3	134	83	4	680	29	15	21	33	1.94
387467--390183	907	3.0	907	88	5	3970	29	17	17	35	1.92
391959--391983	12	2.1	12	100	0	50	32	16	28	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
395484--395531	13	3.7	13	77	0	60	39	20	6	33	1.78
395477--395544	26	2.6	26	90	0	100	35	19	10	35	1.85
395713--395755	2	21.5	2	100	0	86	48	0	0	51	1.00
403050--403102	20	2.7	20	93	0	97	37	16	22	22	1.94
410849--410888	20	2.0	20	95	0	71	17	0	42	40	1.49
415674--415711	20	2.0	20	90	10	62	34	13	26	26	1.93
415969--416006	18	2.1	18	85	9	51	36	13	31	18	1.89
426012--426053	20	2.2	20	95	4	77	40	7	4	47	1.52
426584--427416	36	23.2	36	80	5	815	27	20	12	38	1.89
427728--428235	139	3.7	140	84	4	629	36	17	19	25	1.94
427728--428243	279	1.9	275	83	6	673	36	17	20	25	1.94
431410--431466	28	2.0	28	96	0	105	17	8	19	54	1.68
431595--431631	3	12.7	3	83	16	51	32	0	0	67	0.91
431595--431645	11	4.9	11	77	20	56	27	0	0	72	0.85
431601--431645	14	3.3	14	77	22	51	26	0	0	73	0.84
436530--436850	106	3.0	106	88	0	464	33	23	19	23	1.97
437052--437210	37	4.4	35	84	7	201	24	21	13	40	1.90
437052--437210	72	2.2	73	88	2	230	24	21	13	40	1.90
437196--437295	29	3.4	29	89	6	141	33	18	11	38	1.85
437264--437334	36	2.0	36	94	0	124	40	19	9	29	1.84
437334--437493	84	1.9	84	94	0	284	31	27	20	20	1.98
437750--437800	3	17.7	3	77	22	56	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437751--437792	5	8.2	5	89	10	59	35	0	0	64	0.94
437750--437821	7	10.3	7	81	13	51	27	0	1	70	0.95
437750--437800	10	5.2	10	83	11	54	35	0	0	64	0.94
437773--437825	7	7.3	7	77	8	52	20	0	1	77	0.87
439055--439084	13	2.3	13	94	0	51	30	0	0	70	0.88
439922--439978	22	2.7	22	80	17	68	75	1	3	19	1.04
439938--439984	10	4.7	10	75	19	53	76	2	2	19	0.99
441395--441443	25	2.0	25	88	8	73	48	6	8	36	1.58
442413--442519	55	1.9	55	84	0	142	46	8	13	31	1.72
442545--442591	20	2.4	19	79	10	58	53	8	17	21	1.70
442964--445252	182	12.6	182	93	1	3908	41	13	16	28	1.86
442964--445252	543	4.2	545	93	1	3888	41	13	16	28	1.86
445388--445550	87	1.9	87	93	2	283	34	13	10	41	1.79
446678--446717	11	3.5	11	83	6	53	40	7	5	47	1.54
446969--447022	23	2.3	24	93	3	92	50	7	0	42	1.30
447431--447462	11	2.9	11	95	0	55	15	18	40	25	1.90
452114--452144	15	2.1	15	93	0	53	45	0	0	54	0.99
455448--455491	21	2.1	21	91	0	70	20	9	31	38	1.84
465906--466154	122	2.0	122	88	2	367	31	16	18	32	1.94
469174--469317	75	1.9	75	85	2	200	30	14	25	29	1.95
470687--470729	22	2.0	22	86	4	61	37	6	13	41	1.72
470940--470965	10	2.6	10	100	0	52	26	7	23	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472208--472241	17	2.1	16	94	5	59	14	5	0	79	0.91
478583--478625	20	2.1	21	87	8	63	18	13	0	67	1.23
478583--478633	20	2.6	20	81	9	61	17	15	0	66	1.25
482453--482486	17	2.1	16	94	5	59	14	5	0	79	0.91
483330--483985	45	14.6	45	94	0	1118	23	23	19	33	1.97
483835--483909	25	3.2	25	61	24	63	22	25	16	36	1.94
484159--484187	3	9.7	3	100	0	58	34	0	0	65	0.93
486024--486066	2	22.0	2	95	4	79	51	0	0	48	1.00
494879--494956	13	5.8	13	76	14	70	75	0	19	5	0.98
494879--494956	20	3.9	19	73	15	68	75	0	19	5	0.98
494879--494956	6	12.7	6	73	16	54	75	0	19	5	0.98
496968--497003	4	9.0	4	93	0	63	50	22	0	27	1.50
497599--497654	29	1.9	29	85	7	78	30	26	19	23	1.98
497974--498477	138	3.7	138	83	3	559	30	19	18	31	1.96
498668--498702	3	11.7	3	87	0	52	34	2	0	62	1.10
498669--498702	12	2.8	12	95	0	59	35	2	0	61	1.11
498860--498947	26	3.4	26	83	0	113	22	46	9	21	1.79
499595--499624	13	2.3	13	94	0	51	30	33	20	16	1.94
504562--504599	19	2.0	20	89	5	60	52	34	2	10	1.50
513077--513121	22	2.1	21	88	8	65	53	11	4	31	1.56
513978--514007	15	2.0	15	100	0	60	40	13	20	26	1.89
513996--514034	20	1.9	21	94	5	71	28	20	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514625--514700	31	2.4	31	84	2	80	30	25	26	18	1.98
515472--515537	16	3.8	16	71	21	60	30	22	19	27	1.98
515442--515498	22	2.6	22	82	0	69	31	21	22	24	1.98
515450--515537	38	2.3	38	92	0	140	29	22	22	25	1.99
515441--515521	22	4.0	22	69	18	66	28	20	24	25	1.99
516890--516931	18	2.3	18	100	0	84	16	33	26	23	1.96
516934--516982	13	3.8	13	97	0	89	18	48	20	12	1.79
516920--516956	18	2.1	18	94	0	65	18	48	21	10	1.78
517000--517081	29	2.8	29	94	0	146	20	10	26	41	1.86
517000--517124	29	4.3	29	84	4	108	24	8	25	40	1.84
524228--524307	29	2.8	29	94	0	133	21	7	25	46	1.77
524286--524352	29	2.3	29	86	0	98	31	5	23	38	1.79
526918--526965	23	2.0	24	84	8	62	22	18	22	35	1.96
530264--530399	63	2.2	62	82	6	166	32	18	23	25	1.97
530387--530444	20	2.7	20	81	10	62	32	18	20	27	1.97
530835--530897	32	1.9	33	81	15	78	46	6	11	36	1.65
532087--532162	19	3.9	19	87	5	75	15	18	28	36	1.92
539737--539777	18	2.3	18	100	0	82	9	21	51	17	1.74
539731--539760	13	2.3	13	100	0	60	13	23	46	16	1.82
539801--539855	10	5.6	10	85	10	78	34	29	21	14	1.93
539801--539856	19	2.9	19	87	10	78	33	28	21	16	1.95
546896--546948	13	3.8	13	83	13	70	16	18	49	15	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546903--546947	16	3.1	15	78	18	58	15	17	53	13	1.73
546896--546955	29	2.0	29	83	3	75	20	18	48	13	1.81
546961--547015	10	5.6	10	85	10	78	34	29	21	14	1.93
546961--547016	19	2.9	19	87	10	78	33	28	21	16	1.95
554244--554299	21	2.7	21	88	0	76	17	21	19	41	1.91
557310--557342	14	2.4	14	90	5	50	27	0	6	66	1.15
558745--558804	19	3.3	19	67	9	52	10	11	21	56	1.64
559770--559807	19	2.0	19	85	10	51	31	0	2	65	1.06
563118--563169	16	3.4	16	77	15	56	73	1	3	21	1.10
563650--563701	21	2.5	21	83	0	68	28	11	25	34	1.91

Tables:   1   2   3   4   5   6