genome.fa.s7718.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007718.1 Hibiscus syriacus cultivar Beakdansim tig00109949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1062497

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
563698--563743	21	2.2	21	84	7	58	56	4	0	39	1.19
564514--564555	17	2.7	15	80	16	50	66	2	0	30	1.04
564740--564795	27	2.2	25	83	6	67	21	3	33	41	1.70
564808--564856	24	2.0	24	100	0	98	32	4	46	16	1.65
565474--565512	20	2.0	21	90	10	64	23	7	10	58	1.56
569339--569371	13	2.6	13	95	4	59	12	0	6	81	0.85
569355--569388	9	3.8	9	96	0	59	17	0	2	79	0.86
570663--570733	34	2.2	31	87	7	97	53	8	12	25	1.66
572595--572621	12	2.2	12	100	0	54	29	0	0	70	0.88
573742--573780	3	13.0	3	100	0	78	33	0	0	66	0.92
574391--574547	79	2.0	78	80	3	174	38	8	12	40	1.74
574686--574721	2	18.0	2	100	0	72	50	0	0	50	1.00
575334--575379	22	2.2	20	84	7	56	63	2	0	34	1.07
578522--578550	2	14.5	2	100	0	58	51	0	0	48	1.00
579120--579186	23	2.9	23	95	0	125	52	4	1	41	1.31
580971--581267	154	1.9	157	97	2	564	37	11	15	36	1.83
595012--595042	9	3.6	9	91	8	55	41	0	22	35	1.54
605935--605975	22	1.9	21	90	5	64	21	0	7	70	1.11
607275--607388	60	1.9	60	83	3	149	34	21	5	38	1.76
608861--608907	24	2.0	24	82	0	58	51	21	10	17	1.75
613084--613108	13	1.9	13	100	0	50	48	4	0	48	1.20
613291--613354	24	2.7	24	74	13	60	40	17	15	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620159--620211	23	2.3	23	86	0	70	15	22	22	39	1.91
620205--620264	28	2.1	28	90	0	93	6	25	25	43	1.78
629557--629595	14	2.8	14	92	0	60	20	12	35	30	1.90
637976--638166	56	3.4	54	81	10	224	40	15	17	26	1.89
639199--639247	25	2.0	25	91	0	80	36	16	22	24	1.94
645872--645987	24	4.8	24	87	4	162	25	15	18	39	1.91
646076--646169	35	2.7	35	93	0	161	10	29	27	31	1.90
650370--650483	59	1.9	60	87	5	169	35	16	14	32	1.90
655420--655482	20	3.2	20	79	2	83	50	12	20	15	1.77
661048--661140	48	1.9	48	93	0	159	23	11	18	46	1.82
661983--662029	25	1.9	25	82	4	60	27	21	25	25	1.99
662933--663206	140	2.0	140	98	0	530	37	6	18	36	1.78
669094--669175	3	26.7	3	76	14	78	63	0	3	32	1.12
669095--669177	19	4.9	17	75	16	75	62	0	3	33	1.12
669097--669172	13	6.1	13	73	11	61	63	0	3	32	1.13
671130--671166	17	2.2	17	90	4	58	16	5	8	70	1.30
675434--675474	22	1.9	21	90	5	64	39	12	21	26	1.89
679723--680260	258	2.1	257	80	6	606	35	16	14	33	1.89
681990--682103	19	6.4	18	75	17	105	3	18	0	77	0.97
681991--682112	27	4.7	26	70	13	90	4	17	0	77	0.96
682055--682111	15	3.8	14	84	13	69	5	15	0	78	0.91
683859--683913	26	2.0	27	89	6	85	56	3	14	25	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694011--694560	102	5.5	102	79	6	528	34	19	18	28	1.95
694296--694361	34	1.9	34	84	0	87	36	19	16	27	1.93
694015--694560	198	2.7	204	78	8	535	34	19	17	28	1.95
694515--694584	35	2.0	35	82	0	86	37	22	15	24	1.93
695296--695587	45	6.5	45	82	1	273	30	19	9	39	1.85
695343--695587	135	1.8	135	89	0	382	29	20	11	39	1.87
695296--695587	90	3.2	90	79	4	313	30	19	9	39	1.85
696074--696244	93	1.8	94	86	3	247	26	27	15	29	1.96
703389--703437	25	2.0	25	88	11	75	57	10	4	28	1.50
704883--704926	14	3.3	14	84	6	56	45	9	11	34	1.72
706505--706534	3	10.0	3	100	0	60	66	0	0	33	0.92
706732--706784	18	2.9	18	89	10	90	33	9	15	41	1.79
706732--706816	35	2.4	36	84	9	104	38	9	10	41	1.72
706730--706820	18	5.2	17	76	9	85	39	8	9	41	1.69
710175--710464	134	2.2	134	87	1	420	24	18	17	39	1.92
721934--721959	2	13.0	2	100	0	52	50	0	0	50	1.00
723109--723145	3	12.7	3	83	16	51	64	0	0	35	0.94
725618--725651	8	4.2	8	88	11	52	61	0	38	0	0.96
726775--727090	46	6.9	46	84	0	409	41	13	21	24	1.88
730405--730437	3	11.0	3	100	0	66	66	0	0	33	0.92
730634--730686	18	2.9	18	88	0	88	32	9	15	43	1.78
737683--737755	18	4.2	17	78	5	74	41	9	8	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
738026--738066	21	2.0	20	86	9	57	51	4	14	29	1.63
739510--739550	18	2.3	18	95	0	73	31	4	29	34	1.79
752260--752293	14	2.2	16	90	10	54	70	14	5	8	1.31
754692--754766	13	5.3	13	77	15	69	17	44	21	17	1.87
754670--754745	18	4.6	18	78	18	101	18	50	19	11	1.78
754674--754752	30	2.6	30	89	2	131	17	46	21	13	1.83
754727--754773	8	6.5	8	77	22	59	14	38	25	21	1.92
754743--754774	7	4.4	7	92	7	55	12	34	28	25	1.92
754727--754773	15	3.3	15	91	5	71	14	38	25	21	1.92
757236--757344	24	4.5	24	74	4	94	20	14	16	48	1.81
759498--759573	13	5.3	13	75	17	62	17	44	21	17	1.86
759476--759552	18	4.6	18	81	15	110	18	50	19	11	1.77
759480--759558	31	2.5	31	91	0	140	17	48	20	13	1.81
759534--759580	8	6.5	8	77	22	59	14	38	25	21	1.92
759550--759581	7	4.4	7	92	7	55	12	34	28	25	1.92
759534--759580	15	3.3	15	91	5	71	14	38	25	21	1.92
762042--762150	24	4.5	24	75	4	103	20	15	16	47	1.82
770357--770439	23	3.8	22	72	15	64	25	27	24	22	2.00
770368--770417	23	2.1	24	88	3	75	20	32	24	24	1.98
774227--774270	18	2.4	19	80	7	54	38	4	4	52	1.42
776331--776387	28	2.0	28	83	6	71	54	8	5	31	1.53
778066--778175	56	2.0	55	96	1	202	50	19	10	19	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
778488--778571	23	3.7	23	88	0	114	35	14	21	28	1.92
778560--778646	27	3.3	27	85	6	115	43	11	16	28	1.82
784731--784782	21	2.5	21	81	3	61	38	19	25	17	1.93
784771--784885	20	5.7	20	80	10	108	32	25	19	23	1.97
784768--784899	61	2.2	61	84	2	167	35	23	17	23	1.95
785073--785116	22	2.0	22	100	0	88	22	45	13	18	1.84
785360--785403	20	2.2	20	87	0	61	11	18	20	50	1.77
785540--785594	25	2.2	24	78	15	58	20	9	18	52	1.71
786725--786769	18	2.5	18	88	0	72	26	44	15	13	1.83
787251--787317	20	3.4	20	81	2	73	38	23	22	14	1.92
787306--787363	14	3.9	14	79	16	71	48	24	17	10	1.78
787290--787380	32	2.8	33	94	3	166	47	21	18	12	1.81
787397--787468	14	4.9	14	83	12	99	9	16	25	48	1.76
787392--787453	32	1.9	32	96	0	115	9	17	24	48	1.77
787469--787524	20	2.8	20	81	2	60	17	23	21	37	1.94
787557--787623	25	2.6	26	76	11	75	22	8	16	52	1.71
787891--787978	41	2.1	41	85	2	122	21	43	14	20	1.88
789393--789428	14	2.6	14	90	0	54	30	0	22	47	1.52
789565--789632	19	3.8	19	85	14	101	47	17	22	13	1.82
789633--789714	40	2.0	40	92	0	137	18	20	17	43	1.88
789639--789709	20	3.5	20	69	7	63	18	22	18	40	1.91
789931--789980	20	2.5	20	80	0	73	22	18	22	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790831--790884	24	2.2	24	90	0	81	22	16	20	40	1.91
791058--791082	12	2.1	12	100	0	50	72	0	28	0	0.86
793374--793504	19	7.7	19	66	23	94	42	19	22	14	1.88
793374--793500	33	3.8	33	88	4	202	42	19	22	14	1.88
793375--793507	66	2.0	66	97	0	248	41	19	22	16	1.90
793515--793571	14	3.7	14	72	20	51	10	24	21	43	1.83
793500--793589	33	2.7	33	92	0	144	14	22	20	43	1.87
793529--793589	19	3.5	19	68	21	60	13	22	19	44	1.85
793696--793732	14	2.6	14	91	0	65	45	24	0	29	1.53
795088--795293	42	4.9	41	72	9	164	22	16	37	22	1.94

Tables:   1   2   3   4   5   6