Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007718.1 Hibiscus syriacus cultivar Beakdansim tig00109949_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1062497

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 633 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1012300--1012365
12
5.2
13
81
13
59
37
1
0
60
1.06
1013775--1013814
12
3.1
13
82
10
55
40
0
0
60
0.97
1025123--1025167
7
6.0
7
87
12
63
82
0
17
0
0.68
1025119--1025167
23
2.1
23
92
7
82
81
0
18
0
0.69
1026303--1026619
83
3.8
84
94
0
530
26
12
23
36
1.91
1027455--1027989
226
2.4
226
89
4
808
36
13
19
30
1.91
1027455--1027894
113
3.9
113
96
0
790
34
14
19
31
1.92
1027927--1028027
41
2.6
37
83
11
132
49
7
22
19
1.74
1028386--1028444
3
20.0
3
92
3
102
33
1
0
64
1.04
1029762--1029801
12
3.1
13
82
10
55
40
0
0
60
0.97
1031109--1031160
26
2.0
27
84
3
70
73
3
1
21
1.10
1031131--1031207
22
3.5
22
75
18
63
70
0
1
28
0.96
1031151--1031202
13
3.9
14
77
22
51
69
0
0
30
0.89
1031163--1031227
23
2.8
23
81
9
78
64
0
3
32
1.09
1031238--1031264
10
2.7
10
100
0
54
77
0
0
22
0.76
1031234--1031316
13
6.1
14
67
19
50
66
4
2
26
1.24
1031283--1031416
69
1.9
69
82
14
170
62
2
9
24
1.40
1031959--1032043
37
2.3
37
83
0
107
32
9
14
43
1.77
1032805--1034066
106
11.9
106
91
1
1942
23
17
24
34
1.96
1035675--1035733
6
9.5
6
75
14
57
1
15
3
79
0.94
1035675--1035746
18
4.0
18
79
12
69
1
13
4
80
0.92
1035689--1035739
9
5.6
9
86
4
66
0
15
1
82
0.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1040191--1040248
17
3.5
17
75
11
57
65
0
1
32
1.03
1040273--1040356
28
3.0
28
73
22
70
65
2
4
27
1.25
1040367--1040395
2
14.5
2
100
0
58
51
0
0
48
1.00
1040534--1040561
2
14.0
2
100
0
56
50
0
0
50
1.00
1041012--1041113
37
2.8
37
89
0
141
32
14
12
40
1.84
1046751--1046780
14
2.1
14
100
0
60
20
20
6
53
1.67
1046800--1046869
3
22.7
3
77
11
70
32
2
2
61
1.25
1049417--1049469
16
3.2
16
77
15
54
62
24
0
13
1.31
1051495--1051551
20
2.7
21
84
13
73
35
14
22
28
1.93
1056491--1056525
18
1.9
18
88
0
52
51
8
5
34
1.56
1058324--1058441
35
3.3
35
75
11
114
27
14
19
38
1.90

Tables:   1   2   3   4   5   6

The End!