genome.fa.s7749.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007749.1 Hibiscus syriacus cultivar Beakdansim tig00110015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1787532

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 889 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339639--339699	21	3.0	20	85	4	68	31	13	26	29	1.93
339640--339741	20	5.0	20	80	3	96	26	12	29	31	1.93
339640--339741	41	2.5	41	80	1	116	26	12	29	31	1.93
339589--339739	81	1.9	80	81	4	187	29	11	27	31	1.91
344004--344047	20	2.2	20	95	0	79	31	45	9	13	1.75
347097--347164	29	2.3	29	89	0	100	33	10	23	32	1.88
347695--347989	142	2.1	142	92	0	491	29	23	17	29	1.97
347977--348052	21	3.6	21	92	0	125	42	23	14	19	1.88
348426--348540	19	5.7	19	74	16	70	33	26	6	33	1.81
348936--348990	18	3.3	18	63	31	50	47	23	18	10	1.80
348930--348992	31	2.0	31	100	0	126	46	22	19	12	1.83
350342--350392	19	2.6	20	90	3	77	43	23	17	15	1.88
350379--350432	20	2.7	20	94	0	90	51	18	18	11	1.74
351481--351526	23	2.0	24	87	12	69	76	0	4	19	0.96
352886--352942	27	2.1	27	86	0	78	43	5	40	10	1.62
362037--362079	22	2.0	22	85	0	59	30	6	20	41	1.79
364845--365216	186	2.0	185	96	3	694	33	15	17	33	1.91
367963--368017	22	2.5	22	81	0	65	29	7	23	40	1.81
381471--381782	156	2.0	156	100	0	624	28	16	24	30	1.97
382184--382545	81	4.4	81	77	7	293	23	21	20	34	1.96
382270--382545	84	3.3	82	83	4	295	22	21	21	35	1.96
385822--385904	33	2.5	33	100	0	166	24	9	37	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394081--394105	6	4.2	6	100	0	50	36	32	0	32	1.58
394102--394132	6	5.2	6	100	0	62	35	48	16	0	1.46
394130--394178	5	9.8	5	93	0	62	20	34	40	4	1.71
396253--396334	29	2.8	29	90	3	121	30	7	4	57	1.47
396285--396383	50	2.0	48	82	3	117	27	9	7	56	1.56
396346--396400	28	2.0	28	88	0	83	30	7	12	49	1.68
406901--406969	32	2.2	32	84	5	86	20	30	24	24	1.99
407362--407483	59	2.0	60	95	4	221	19	23	29	27	1.98
410001--410044	21	2.0	22	82	4	54	45	0	6	47	1.29
411739--411801	3	21.0	3	86	0	90	60	0	0	39	0.97
411727--411801	18	4.4	17	83	13	100	58	0	0	41	0.98
413269--413564	147	2.0	146	95	3	533	31	11	17	39	1.86
414077--414110	3	11.3	3	93	0	59	29	0	2	67	1.05
414992--415112	37	3.3	37	90	5	192	33	7	29	28	1.85
415025--415084	18	3.3	18	68	13	59	35	6	30	28	1.83
419441--419561	46	2.8	45	78	15	144	35	5	29	28	1.81
422959--423021	19	3.6	19	65	20	55	39	1	1	57	1.18
422944--423035	33	2.7	33	93	3	148	41	3	2	53	1.29
424079--424120	22	1.9	22	95	0	75	52	0	16	30	1.44
431939--431998	23	2.6	23	79	10	61	18	26	28	26	1.98
431957--432006	23	2.2	23	85	0	64	20	24	26	30	1.98
437395--437453	29	2.0	30	83	9	77	38	8	11	40	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437719--437787	23	3.0	23	78	4	77	15	26	26	31	1.96
448186--448219	15	2.3	15	89	0	50	38	0	23	38	1.55
452166--452252	32	2.7	32	83	3	104	16	33	24	26	1.95
454476--454545	24	2.9	24	76	0	77	51	17	11	20	1.75
454476--454568	12	7.8	12	67	9	55	48	17	12	21	1.80
454527--454582	24	2.3	24	78	6	69	46	16	17	19	1.84
455707--455742	18	2.0	18	88	0	54	30	16	0	52	1.44
457052--457082	13	2.3	14	94	5	55	29	25	29	16	1.96
457071--457126	18	3.1	18	97	0	103	12	21	48	17	1.80
458550--458622	21	3.5	21	68	26	64	46	4	16	32	1.66
458540--458623	42	2.0	42	95	4	152	47	4	14	33	1.65
458542--458611	21	3.2	24	63	32	57	47	4	15	32	1.65
460973--461022	3	16.7	3	100	0	100	34	0	0	66	0.92
464330--464459	70	1.9	70	84	12	180	30	28	20	21	1.98
466237--466304	23	3.0	23	78	8	75	19	23	25	32	1.97
470939--470967	14	2.1	14	100	0	58	34	13	6	44	1.71
472375--472452	20	3.5	20	69	24	66	19	28	11	41	1.86
472403--472530	27	5.3	27	61	24	86	19	25	13	42	1.87
472347--472698	47	7.5	47	90	4	534	21	24	11	42	1.87
472534--472668	27	5.5	27	66	25	84	22	24	12	40	1.89
472347--472698	138	2.5	140	88	5	521	21	24	11	42	1.87
472562--472688	20	5.7	20	67	23	74	21	25	13	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472347--472698	185	1.9	188	90	4	570	21	24	11	42	1.87
473129--473309	95	1.9	95	90	2	292	28	22	16	33	1.95
480305--480353	23	2.1	23	100	0	98	24	20	24	30	1.98
481037--481098	8	7.9	8	83	15	67	30	1	29	38	1.67
481172--481701	83	6.4	83	81	4	550	33	17	18	30	1.94
481172--481701	249	2.1	247	83	4	647	33	17	18	30	1.94
482677--482751	32	2.3	33	90	2	116	57	24	2	16	1.52
484701--484728	2	14.0	2	100	0	56	50	0	0	50	1.00
485544--485574	14	2.2	14	94	0	53	61	6	0	32	1.21
485793--485836	15	2.9	15	80	9	54	68	0	2	29	1.02
485748--485812	35	1.9	35	84	6	89	63	3	0	33	1.10
488524--488598	35	2.1	35	95	0	132	28	0	26	45	1.54
491791--492228	219	2.0	220	98	1	844	34	16	17	31	1.92
499556--499597	5	9.2	5	89	10	56	0	21	54	23	1.44
504714--505096	131	2.9	131	85	1	491	39	17	10	31	1.84
505540--505589	24	2.1	24	88	7	75	70	10	6	14	1.33
508033--508084	3	18.0	3	88	7	63	38	0	0	61	0.96
508039--508091	26	2.0	26	89	7	81	41	0	0	58	0.98
508036--508091	29	1.9	29	92	7	96	41	0	0	58	0.98
508741--508904	54	3.0	54	85	5	217	28	19	14	37	1.90
509899--509960	31	1.9	33	84	12	85	37	1	4	56	1.30
510014--510060	24	2.0	24	83	8	60	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516574--516655	38	2.2	38	90	0	128	51	12	7	29	1.66
516951--517008	27	2.1	27	83	0	71	63	3	1	31	1.21
525043--525177	71	1.9	71	86	6	193	16	15	9	58	1.62
548049--548087	13	3.0	13	82	14	53	74	7	5	12	1.20
548819--548859	20	2.0	21	86	13	59	58	0	0	41	0.98
552082--552122	3	13.3	3	94	5	73	65	0	0	34	0.93
552226--552258	14	2.4	14	100	0	66	27	30	9	33	1.88
553701--553753	26	2.0	26	100	0	106	43	7	30	18	1.78
554631--554658	6	4.7	6	100	0	56	35	0	14	50	1.43
556988--557037	20	2.5	19	81	9	64	42	22	22	14	1.88
563751--563795	22	2.0	22	86	4	63	31	33	26	8	1.87
564784--564830	22	2.0	25	84	12	64	51	2	17	29	1.57
565267--565583	100	3.1	101	94	3	539	26	13	23	36	1.92
565599--565658	23	2.7	23	81	2	77	18	26	28	26	1.98
569289--569342	24	2.2	24	86	0	72	61	12	14	11	1.58
569522--569566	14	3.2	14	77	0	54	57	13	13	15	1.65
582580--582618	20	2.0	20	100	0	78	23	20	20	35	1.96
584095--584125	15	2.0	16	93	6	55	35	0	6	58	1.24
585917--585982	24	2.8	24	81	2	80	21	21	25	31	1.98
592903--592940	20	2.0	20	89	5	60	50	21	5	23	1.69
594413--594658	120	2.1	119	99	0	483	21	15	17	44	1.86
604611--604716	53	2.0	53	94	3	187	29	16	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605913--605972	22	2.7	23	79	7	70	30	30	13	26	1.94
607374--607472	47	2.1	47	96	0	180	37	22	3	37	1.70
607803--607871	23	3.0	23	84	0	102	30	26	26	17	1.97
609525--609562	20	1.9	20	100	0	76	23	23	21	31	1.98
610734--610785	20	2.6	20	96	0	95	36	21	19	23	1.95
614847--615172	162	2.0	163	99	0	645	29	11	18	41	1.85
616398--616476	24	3.3	24	100	0	158	22	17	13	45	1.84
620022--620099	30	2.6	30	86	10	97	60	8	10	20	1.56
622343--622536	68	2.9	65	85	6	214	36	12	18	32	1.88
622343--622536	35	5.8	33	74	12	139	36	12	18	32	1.88

Tables:   1   2   3   4   5   6   7   8